sjSDM (version 1.0.6)

plotsjSDMcoef: Internal coefficients plot

Description

Plotting coefficients returned by sjSDM model. This function only for model fitted by linear, fitted by DNN is not yet supported.

Usage

plotsjSDMcoef(object, wrap_col = NULL, group = NULL, col = NULL, slist = NULL)

Value

ggplot2 object

Arguments

object

a model fitted by sjSDM

wrap_col

Scales argument passed to wrap_col

group

Define the taxonomic characteristics of a species, you need to provide a dataframe with column1 named “species” and column2 named “group”, default is NULL. For example, group[1,1]== "sp1", group[1,2]== "Mammal".

col

Define colors for groups, default is NULL.

slist

Select the species you want to plot, default is all, parameter is not supported yet.

Author

CAI Wang

Examples

if (FALSE) {
library(sjSDM)
# simulate community:
com = simulate_SDM(env = 6L, species = 7L, sites = 100L)

# fit model:
model = sjSDM(Y = com$response,env = com$env_weights, iter = 2L, se = TRUE,
              verbose = FALSE) 

# normal plot
plot(model)

# colored by groups
species=c("sp1","sp2","sp3","sp4","sp5","sp6","sp7")
group=c("mammal","bird","fish","fish","mammal","amphibian","amphibian")
group = data.frame(species=species,group=group)

plot(model,group=group)
}