read_akt

Reads in an <code>akt kin</code> <a href="https://illumina.github.io/akt/#kin">results file</a>. Input <code>file</code> must have seven columns, whitespace delimited:<ol>
<li>id1 (member 1)</li>
<li>id2 (member 2)</li>
<li>IBD0 (ratio of IBD0/All SNPS)</li>
<li>IBD1 (ratio of IBD1/All SNPS)</li>
<li>Kinship Coefficient</li>
<li>NSNPS</li>
</ol>

Utilities for single nucleotide polymorphism (SNP) based kinship analysis
testing and evaluation. The 'skater' package contains functions for importing, parsing,
and analyzing pedigree data, performing relationship degree inference, benchmarking
relationship degree classification, and summarizing identity by descent (IBD) segment data.
Package functions and methods are described in Turner et al. (2021) "skater: An R package
for SNP-based Kinship Analysis, Testing, and Evaluation" <doi:10.1101/2021.07.21.453083>.

Stephen Turner

skater

Utilities for SNP-Based Kinship Analysis

Matthew Scholz

VP Nagraj

Signature Science, LLC. 

read_akt function

<dl><dt>file</dt>
<dd>Input file path</dd></dl>

Arguments

Reads in an <code>akt kin</code> <a href='https://illumina.github.io/akt/#kin'>results file</a>. Input <code>file</code> must have seven columns, whitespace delimited:<ol>
<li>id1 (member 1)</li>
<li>id2 (member 2)</li>
<li>IBD0 (ratio of IBD0/All SNPS)</li>
<li>IBD1 (ratio of IBD1/All SNPS)</li>
<li>Kinship Coefficient</li>
<li>NSNPS</li>
</ol>

Read AKT kin output file — read_akt

<dl>

<dt>file</dt>
<dd>Input file path</dd>

</dl>

read_akt: Read AKT kin output file

Description

Usage

Value

Arguments

Examples