read_fam

Reads in a <a href="https://www.cog-genomics.org/plink/1.9/formats#fam">PLINK-formatted .fam file</a>. Input <code>file</code> must have six columns:<ol>
<li>Family ID</li>
<li>Individual ID</li>
<li>Father ID</li>
<li>Mother ID</li>
<li>Sex</li>
<li>Affected Status</li>
</ol>

Utilities for single nucleotide polymorphism (SNP) based kinship analysis
testing and evaluation. The 'skater' package contains functions for importing, parsing,
and analyzing pedigree data, performing relationship degree inference, benchmarking
relationship degree classification, and summarizing identity by descent (IBD) segment data.
Package functions and methods are described in Turner et al. (2021) "skater: An R package
for SNP-based Kinship Analysis, Testing, and Evaluation" <doi:10.1101/2021.07.21.453083>.

Stephen Turner

skater

Utilities for SNP-Based Kinship Analysis

Matthew Scholz

VP Nagraj

Signature Science, LLC. 

read_fam function

<dl><dt>file</dt>
<dd>Input file path</dd></dl>

Arguments

Reads in a <a href='https://www.cog-genomics.org/plink/1.9/formats#fam'>PLINK-formatted .fam file</a>. Input <code>file</code> must have six columns:<ol>
<li>Family ID</li>
<li>Individual ID</li>
<li>Father ID</li>
<li>Mother ID</li>
<li>Sex</li>
<li>Affected Status</li>
</ol>

Read PLINK-formatted .fam file — read_fam

<dl>

<dt>file</dt>
<dd>Input file path</dd>

</dl>

read_fam: Read PLINK-formatted .fam file

Description

Usage

Value

Arguments

Examples