read_ibis

Reads in an <code>ibis</code> <a href="https://github.com/williamslab/ibis">results file</a>. Input <code>file</code> must have six columns, whitespace delimited:<ol>
<li>id1 (member 1)</li>
<li>id2 (member 2)</li>
<li>Kinship Coefficient</li>
<li>IBD2 (ratio of IBD2/All SNPS)</li>
<li>Segment count</li>
<li>Kinship Degree</li>
</ol>

Utilities for single nucleotide polymorphism (SNP) based kinship analysis
testing and evaluation. The 'skater' package contains functions for importing, parsing,
and analyzing pedigree data, performing relationship degree inference, benchmarking
relationship degree classification, and summarizing identity by descent (IBD) segment data.
Package functions and methods are described in Turner et al. (2021) "skater: An R package
for SNP-based Kinship Analysis, Testing, and Evaluation" <doi:10.1101/2021.07.21.453083>.

Stephen Turner

skater

Utilities for SNP-Based Kinship Analysis

Matthew Scholz

VP Nagraj

Signature Science, LLC. 

read_ibis function

<dl><dt>file</dt>
<dd>Input file path</dd></dl>

Arguments

Reads in an <code>ibis</code> <a href='https://github.com/williamslab/ibis'>results file</a>. Input <code>file</code> must have six columns, whitespace delimited:<ol>
<li>id1 (member 1)</li>
<li>id2 (member 2)</li>
<li>Kinship Coefficient</li>
<li>IBD2 (ratio of IBD2/All SNPS)</li>
<li>Segment count</li>
<li>Kinship Degree</li>
</ol>

Read IBIS coef output file — read_ibis

<dl>

<dt>file</dt>
<dd>Input file path</dd>

</dl>

read_ibis: Read IBIS coef output file

Description

Usage

Value

Arguments

Examples