read_plink2_king

Reads in the output from <code>plink2 --make-king-table</code> (<a href="https://www.cog-genomics.org/plink/2.0/distance#make_king">documentation</a>).
Input <code>file</code> must have six columns, tab delimited:<ol>
<li>id1 (member 1)</li>
<li>id2 (member 2)</li>
<li>nsnps</li>
<li>hethet: proportion of sites where both are heterozygous</li>
<li>k: Kinship Coefficient</li>
</ol>

Utilities for single nucleotide polymorphism (SNP) based kinship analysis
testing and evaluation. The 'skater' package contains functions for importing, parsing,
and analyzing pedigree data, performing relationship degree inference, benchmarking
relationship degree classification, and summarizing identity by descent (IBD) segment data.
Package functions and methods are described in Turner et al. (2021) "skater: An R package
for SNP-based Kinship Analysis, Testing, and Evaluation" <doi:10.1101/2021.07.21.453083>.

Stephen Turner

skater

Utilities for SNP-Based Kinship Analysis

Matthew Scholz

VP Nagraj

Signature Science, LLC. 

read_plink2_king function

<dl><dt>file</dt>
<dd>Input file path</dd></dl>

Arguments

Reads in the output from <code>plink2 --make-king-table</code> (<a href='https://www.cog-genomics.org/plink/2.0/distance#make_king'>documentation</a>).
Input <code>file</code> must have six columns, tab delimited:<ol>
<li>id1 (member 1)</li>
<li>id2 (member 2)</li>
<li>nsnps</li>
<li>hethet: proportion of sites where both are heterozygous</li>
<li>k: Kinship Coefficient</li>
</ol>

Read PLINK KING table — read_plink2_king

<dl>

<dt>file</dt>
<dd>Input file path</dd>

</dl>

read_plink2_king: Read PLINK KING table

Description

Usage

Value

Arguments

References

Examples