skeleSim (version 0.9.8)

analysis.funcs: Analysis functions for skeleSim parameter objects

Description

Run Global, Locus, and Pairwise analyses on results from a single simulation replicate stored in [e-mail]#'

Usage

analysisFunc(params)
loadResultsMatrix(params, mat, label)
formatOverallStats(g, num.perm.reps)
globalAnalysis(g, num.perm.reps)
locusAnalysisGenotypes(g)
hapSmryFunc(g)
locusAnalysisHaplotypes(g)
calcChordDist(dat)
pairwiseAnalysis(g, num.perm.reps)

Arguments

params

a '>skeleSim.params object.

mat

results matrix to be loaded into params object.

label

analysis type label ("Global", "Locus", or "Pairwise").

g

a '>gtypes object.

num.perm.reps

number of permutation replicates.

dat

data.frame in hierfstat format (see genet.dist).