fastsimcoal.params-class

fastsimcoal.params

An S4 class storing parameters specific to fastsimcoal

A shiny interface and supporting tools to guide users in choosing
appropriate simulations, setting parameters, calculating summary genetic
statistics, and organizing data output, all within the R environment. In
addition to supporting existing forward and reverse-time simulators, new
simulators can be integrated into the environment relatively easily.

Allan Strand

skeleSim

Genetic Simulation Engine

Christian Parobek

Eric Archer

Libby Liggins

Michelle DePrenger-Levin

Sean Hoban

fastsimcoal.params-class function

<dl class="dl-horizontal">
<dt><code>fastsimcoal.exec</code></dt><dd>character string for the fastsimcoal command line
executable.</dd></dl><dt><code>pop.info</code></dt><dd>matrix of population sampling information created by the
<code><a rd-options="" href="/link/fscPopInfo?package=skeleSim&version=0.9.8" data-mini-rdoc="skeleSim::fscPopInfo">fscPopInfo</a></code> function.</dd><dt><code>hist.ev</code></dt><dd>matrix of historical events created by the
<code><a rd-options="" href="/link/fscHistEv?package=skeleSim&version=0.9.8" data-mini-rdoc="skeleSim::fscHistEv">fscHistEv</a></code> function.</dd><dt><code>locus.params</code></dt><dd>data.frame specifying loci to simulate created by the
<code><a rd-options="" href="/link/fscLocusParams?package=skeleSim&version=0.9.8" data-mini-rdoc="skeleSim::fscLocusParams">fscLocusParams</a></code> function.</dd><dt><code>growth.rate</code></dt><dd>a vector <code>num.pop</code> long giving the growth rate of
each population.</dd><dt><code>sample.times</code></dt><dd>a vector <code>num.pop</code> long giving the time (in generations)
that samples are drawn from in population.</dd>

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fastsimcoal Parameters Class — fastsimcoal.params-class

fastsimcoal Parameters Class

fastsimcoal.params-class: fastsimcoal Parameters Class

Description

Arguments

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