skiftiTools (version 0.1.0)

save_skeleton: Create png from mask and data in Nifti format

Description

Skeleton mask and corresponding image intensity data must be in Nifti format. The skeleton mask is used to determine the coordinates of intensity data.

Usage

save_skeleton(
  mask,
  data,
  img_hdr,
  output,
  legend_title,
  scale,
  keep_temp = FALSE,
  palette = "lajolla",
  verbose = FALSE
)

Value

No output, as resuts are saved to a png file

Arguments

mask

Intensity data in Nifti object format

data

Skeleton at same imaging space as the data, in Nifti format

img_hdr

Nifti header object

output

Output PNG filename

legend_title

Title to be shown

scale

scaling for intensity values, tune for better color depth

keep_temp

TRUE/FALSE(default) to keep temporary png images

palette

color palette

verbose

TRUE/FALSE(default), for verbosity