sleepr v0.3.0

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by Quentin Geissmann View Source

Analyse Activity and Sleep Behaviour

Use behavioural variables to score activity and infer sleep from bouts of immobility. It is primarily designed to score sleep in fruit flies from Drosophila Activity Monitor (TriKinetics) and Ethoscope data. It implements sleep scoring using the "five-minute rule" (Hendricks et al. (2000) <DOI:10.1016/S0896-6273(00)80877-6>), activity classification for Ethoscopes (Geissmann et al. (2017) <DOI:10.1371/journal.pbio.2003026>) and a new algorithm to detect when animals are dead.

Readme

`sleepr`

sleepr is part of the rethomics framework. This README is a short explanation of the basics of sleepr. A comprehensive tutorial is available on the rethomics webpage. We also provide a conventional pdf documentation.

Installation

library(devtools)
install_github("rethomics/sleepr")

Functions in sleepr

Name	Description
bout_analysis	Find "bouts" in categorical time series
curate_dead_animals	Remove -- irrelevant -- data after individual have died
motion_detectors	Motion detector for Ethocope data
sleep_annotation	Score sleep behaviour from immobility
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Details

Date	2018-10-04
License	GPL-3
Encoding	UTF-8
LazyData	true
URL	https://github.com/rethomics/sleepr
BugReports	https://github.com/rethomics/sleepr/issues
RoxygenNote	6.1.0
NeedsCompilation	no
Packaged	2018-10-22 01:02:57 UTC; quentin
Repository	CRAN
Date/Publication	2018-10-30 15:50:10 UTC

depends	behavr , R (>= 3.00)
suggests	covr , knitr , testthat
imports	data.table
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