Make an 'MA plot' for a given test. MA plots display, for each transcript, the mean of abundances across samples on the x-axis and fold change on the y-axis.
plot_ma(obj, which_beta, which_model = "full", sig_level = 0.1,
point_alpha = 0.2, sig_color = "red", highlight = NULL,
highlight_color = "green")a sleuth object
a character string denoting which beta to use for highlighting the transcript
a character string denoting which model to use for the test
the alpha for the points
a ggplot2 object