sleuth (version 0.27.3)

plot_transcript_heatmap: Plot clustered heatmap

Description

Plot a clustered heatmap. The clustering is done by the hclust function.

Usage

plot_transcript_heatmap(transcripts, obj, units = "tpm", trans = "log")

Arguments

transcripts

a vector of strings containing a list of transcripts to be plotted in a heatmap

obj

a sleuth object

units

a string specifying which units to use, either tpm or est_counts

trans

a string specifying a function to transform the data by

Value

a ggplot object