sleuth (version 0.28.0)

sleuth_gene_table: Create a gene table from a sleuth object

Description

Take in a sleuth object with added genes, and return a data table in which genes list the most significant transcript mapping to themselves

Usage

sleuth_gene_table(obj, test, test_type = "lrt", which_model = "full",
  which_group = "ens_gene")

Arguments

obj

a sleuth object

test

a character string denoting which beta to use

test_type

either 'wt' for Wald test or 'lrt' for likelihood ratio test

which_model

a character string denoting which model to use

which_group

a character string denoting which gene group to use

Value

a data.frame containing gene names, transcript names, and significance