slfm_list

path

if the function should look recursively inside folders

recursive

prior shape parameter for Gamma distribution

prior scale parameter for Gamma distribution

gamma_a

gamma_b

omega_0

omega_1

sample

burnin

degenerate

This function is used to fit a Bayesian sparse
latent factor model to a directory of numeric matrices.

Set of tools to find coherent patterns in microarray data
    using a Bayesian sparse latent factor model (Duarte and Mayrink 2015 -
    http://link.springer.com/chapter/10.1007%2F978-3-319-12454-4_15).
    Considerable effort has been put into making slfm fast and memory efficient,
    turning it an interesting alternative to simpler methods in terms
    of execution time. It implements versions of the SLFM using both type
    of mixtures: using a degenerate distribution or a very concentrated
    normal distribution for the spike part of the mixture. It also implements
    additional functions to help pre-process the data and fit the model
    for a large number of arrays.

slfm_list: Fit SLFM to the matrices inside a directory

Description

Usage

Arguments