slingshot (version 2.1.1)

slingLineages: Extract the Slingshot lineages

Description

Extract lineages (represented by ordered sets of clusters) identified by slingshot.

Usage

slingLineages(x)
# S4 method for PseudotimeOrdering
slingLineages(x)
# S4 method for SingleCellExperiment
slingLineages(x)
# S4 method for SlingshotDataSet
slingLineages(x)

Arguments

x

an object containing slingshot output.

Value

A list of lineages, represented by ordered sets of clusters.

Examples

# NOT RUN {
data("slingshotExample")
rd <- slingshotExample$rd
cl <- slingshotExample$cl
pto <- slingshot(rd, cl, start.clus = '1')
slingLineages(pto)
# }