alignplot

This plots a series of Procrustes aligned configuration plots, aligned to the reference configuration.

Flexible multidimensional scaling (MDS) methods and extensions to the package 'smacof'. This package contains various functions, wrappers, methods and classes for fitting, plotting and displaying a large number of different flexible MDS models. These are: Torgerson scaling (Torgerson, 1958, ISBN:978-0471879459) with powers, Sammon mapping (Sammon, 1969, <doi:10.1109/T-C.1969.222678>) with ratio and interval optimal scaling, Multiscale MDS (Ramsay, 1977, <doi:10.1007/BF02294052>) with ratio and interval optimal scaling, s-stress MDS (ALSCAL; Takane, Young & De Leeuw, 1977, <doi:10.1007/BF02293745>) with ratio and interval optimal scaling, elastic scaling (McGee, 1966, <doi:10.1111/j.2044-8317.1966.tb00367.x>) with ratio and interval optimal scaling, r-stress MDS (De Leeuw, Groenen & Mair, 2016, <https://rpubs.com/deleeuw/142619>) with ratio, interval, splines and nonmetric optimal scaling, power-stress MDS (POST-MDS; Buja & Swayne, 2002 <doi:10.1007/s00357-001-0031-0>) with ratio and interval optimal scaling, restricted power-stress (Rusch, Mair & Hornik, 2021, <doi:10.1080/10618600.2020.1869027>) with ratio and interval optimal scaling, approximate power-stress with ratio optimal scaling (Rusch, Mair & Hornik, 2021, <doi:10.1080/10618600.2020.1869027>), Box-Cox MDS (Chen & Buja, 2013, <https://jmlr.org/papers/v14/chen13a.html>), local MDS (Chen & Buja, 2009, <doi:10.1198/jasa.2009.0111>), curvilinear component analysis (Demartines & Herault, 1997, <doi:10.1109/72.554199>), curvilinear distance analysis (Lee, Lendasse & Verleysen, 2004, <doi:10.1016/j.neucom.2004.01.007>), nonlinear MDS with optimal dissimilarity powers functions (De Leeuw, 2024, <https://github.com/deleeuw/smacofManual/blob/main/smacofPO(power)/smacofPO.pdf>), sparsified (power) MDS and sparsified multidimensional (power) distance analysis aka extended curvilinear (power) component analysis and extended curvilinear (power) distance analysis (Rusch, 2024, <doi:10.57938/355bf835-ddb7-42f4-8b85-129799fc240e>). Some functions are suitably flexible to allow any other sensible combination of explicit power transformations for weights, distances and input proximities with implicit ratio, interval, splines or nonmetric optimal scaling of the input proximities. Most functions use a Majorization-Minimization algorithm. Currently the methods are only available for one-mode two-way data (symmetric dissimilarity matrices).

Thomas Rusch

smacofx

Flexible Multidimensional Scaling and 'smacof' Extensions

Jan de Leeuw

Lisha Chen

Patrick Mair

alignplot function

<dl><dt>objectlist</dt>
<dd>a list of object of class smacofP or smacofB (or anything with a $conf slot where the configuration is). Thse are the plots to Procrustes adjust.</dd>
<dt>reference</dt>
<dd>the reference configuration/matrix</dd>
<dt>layoutmat</dt>
<dd>a matrix layout for the plot region. It is the 'mat' argument to 'layout'. If missing, the function attempts to create a layout that can hold all plots, but it is not very smart.</dd>
<dt>mains</dt>
<dd>a character string of headings for each plot. It must be of length(objectlist).</dd>
<dt>...</dt>
<dd>additional arguments passed to the confplot of 'plot.smacofP'. See 'plot.smacof' for the options.</dd></dl>

Arguments

Function to plot Procrustes aligned MDS configurations — alignplot

<dl>

<dt>objectlist</dt>
<dd>a list of object of class smacofP or smacofB (or anything with a $conf slot where the configuration is). Thse are the plots to Procrustes adjust.</dd>


<dt>reference</dt>
<dd>the reference configuration/matrix</dd>


<dt>layoutmat</dt>
<dd>a matrix layout for the plot region. It is the 'mat' argument to 'layout'. If missing, the function attempts to create a layout that can hold all plots, but it is not very smart.</dd>


<dt>mains</dt>
<dd>a character string of headings for each plot. It must be of length(objectlist).</dd>


<dt>...</dt>
<dd>additional arguments passed to the confplot of 'plot.smacofP'. See 'plot.smacof' for the options.</dd>

</dl>

alignplot: Function to plot Procrustes aligned MDS configurations

Description

Usage

Value

Arguments

Examples