read_packedancestrymap

<p>The prefix of the file name that contains the genotype data (i.e., without the <code>*.geno</code>).</p>

pref

<p>This function loads genotype data in <code>PACKEDANCESTRYMAP</code> format (binary or compressed).</p>

Fast computation of multivariate analyses of small (10s to 100s markers) to big (1000s to 100000s) genotype data. Runs Principal Component Analysis allowing for centering, z-score standardization and scaling for genetic drift, projection of ancient samples to modern genetic space and multivariate tests for differences in group location (Permutation-Based Multivariate Analysis of Variance) and dispersion (Permutation-Based Multivariate Analysis of Dispersion).

Christian Huber

smartsnp

read_packedancestrymap: Read Files in PACKEDANCESTRYMAP format

Description

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