read_packedancestrymap

This function loads genotype data in <code>PACKEDANCESTRYMAP</code> format (binary or compressed).

Fast computation of multivariate analyses of small (10s to 100s markers) to big (1000s to 100000s) genotype data. Runs Principal Component Analysis allowing for centering, z-score standardization and scaling for genetic drift, projection of ancient samples to modern genetic space and multivariate tests for differences in group location (Permutation-Based Multivariate Analysis of Variance) and dispersion (Permutation-Based Multivariate Analysis of Dispersion).

Christian Huber

smartsnp

Fast Multivariate Analyses of Big Genomic Data

Salvador Herrando-Perez

Ray Tobler

read_packedancestrymap function

<dl><dt>pref</dt>
<dd>The prefix of the file name that contains the genotype data (i.e., without the <code>*.geno</code>).</dd></dl>

Arguments

Read Files in PACKEDANCESTRYMAP format — read_packedancestrymap

<dl>

<dt>pref</dt>
<dd>The prefix of the file name that contains the genotype data (i.e., without the <code>*.geno</code>).</dd>

</dl>

read_packedancestrymap: Read Files in PACKEDANCESTRYMAP format

Description

Usage

Value

Arguments