spnModels

Dimer

SEIR

<p>Collection of example stochastic Petri net (SPN) models. Includes <code>LV</code>, a Lotka--Volterra
model, <code>ID</code>, an immigration--death process, <code>BD</code>, a birth--death
process, <code>SIR</code>, a simple SIR model, <code>SEIR</code>, an SEIR epidemic model, <code>Dimer</code>, a simple dimerisation kinetics model, and
<code>MM</code>, a Michaelis--Menten enzyme kinetic model.</p>

datasets

models

data

smfsb

Code and data for modelling and simulation of stochastic kinetic biochemical network models. It contains the code and data associated with the second and third editions of the book Stochastic Modelling for Systems Biology, published by Chapman & Hall/CRC Press.

Darren Wilkinson

Stochastic Modelling for Systems Biology

spnModels function

<p>Each model is a list, with components <code>Pre</code>, <code>Post</code>,
  and <code>h</code>. Some models also include an initial state, <code>M</code>. See
  <code>gillespie</code> and <code>StepGillespie</code> for further details, and
  examples of use.</p>

Format

Example SPN models — spnModels

Example SPN models

spnModels: Example SPN models

Description

Usage

Arguments

Format