smoothMiner (version 0.1-10)

upstreamSeqs-class: Class "upstreamSeqs" collects DNAstrings upstream of genes

Description

environment-based storage of upstream sequences

Objects from the Class

Objects can be created by calls of the form new("upstreamSeqs", ...). These are collections of (possibly large) environments describing upstream sequences of a genome.

Methods

Accessors keys, seqs, code{organism}, and isRevcomp

Examples

if (!exists("sceUpstream")) data(sceUpstream)
keys(sceUpstream)[1:5]
getUpstream("YAL001C", sceUpstream)

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