upstreamSeqs-class

0th

Percentile

Class "upstreamSeqs" collects DNAstrings upstream of genes

environment-based storage of upstream sequences

Keywords
classes
Objects from the Class

Objects can be created by calls of the form new("upstreamSeqs", ...). These are collections of (possibly large) environments describing upstream sequences of a genome.

Methods

Accessors keys, seqs, code{organism}, and isRevcomp

Aliases
  • isRevcomp
  • keys
  • organism
  • seqs
  • isRevcomp,upstreamSeqs-method
  • keys,upstreamSeqs-method
  • organism,upstreamSeqs-method
  • seqs,upstreamSeqs-method
  • show,upstreamSeqs-method
  • upstreamSeqs-class
Examples
if (!exists("sceUpstream")) data(sceUpstream)
keys(sceUpstream)[1:5]
getUpstream("YAL001C", sceUpstream)
Documentation reproduced from package smoothMiner, version 0.1-10, License: Artistic-2.0

Community examples

Looks like there are no examples yet.