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snapCGH (version 1.42.0)

find.param.one: Yields output when there is 1 underlying states

Description

This function provides the output (means/variances, transition matrix, likelihood) when the heterogeneous HMM is fitted with one underlying state. It is a workhorse of the process.data function.

Usage

find.param.one(output.optim)

Arguments

output.optim
The output from fitting a heterogeneous HMM when there is one underlying states

Value

This function outputs the state means/variances, transition matrices, rate parameters, maximised likelihood and convergence information provided by fitting a heterogeneous HMM with one underlying state.