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snpEnrichment (version 1.0-0)

SNPs enrichment analysis

Description

Implements classes and methods for large scale SNP enrichment analysis (e.g. SNPs associated with genes expression and a GWAS signal)

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Install

install.packages('snpEnrichment')

Monthly Downloads

6

Version

1.0-0

License

GPL (>= 2)

Maintainer

Mickael Canouil

Last Published

April 26th, 2013

Functions in snpEnrichment (1.0-0)

snpEnrichment-internal

~ Internal: snpEnrichment objects and methods ~
is.enrichment

Is an Enrichment object
mclapply2

Parallel Versions of lapply with cores and memory control
initFiles

Initialize files for enrichment analysis
excludeSNP

Exclude SNPs from Enrichment analysis
readEnrichment

Read and create EnrichmentRatio object
compareEnrichment

Compare enrichment analysis between two SNPs list
GC

Full Garbage Collection
snpEnrichment-package

~ Overview: SNPs enrichment analysis ~
transcript-dataset

Transcript information in order to check the CIS status for SNPs
SNP-class

Class "SNP"
is.chromosome

Is an Chromosome object
Chromosome-class

Class Chromosome
toyM1-dataset

Toy dataset with SNP data
summary-methods

Summary method (S4)
toyM2-dataset

Toy dataset with SNP data
writeLD

Linkage Disequilibrium (LD) computation with PLINK
reSample

Compute enrichment analysis on an Enrichment object
Enrichment-class

Class Enrichment