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snpEnrichment (version 1.0-0)
SNPs enrichment analysis
Description
Implements classes and methods for large scale SNP enrichment analysis (e.g. SNPs associated with genes expression and a GWAS signal)
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Install
install.packages('snpEnrichment')
Monthly Downloads
111
Version
1.0-0
License
GPL (>= 2)
Maintainer
Mickael Canouil
Last Published
April 26th, 2013
Functions in snpEnrichment (1.0-0)
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snpEnrichment-internal
~ Internal: snpEnrichment objects and methods ~
is.enrichment
Is an Enrichment object
mclapply2
Parallel Versions of
lapply
with cores and memory control
initFiles
Initialize files for enrichment analysis
excludeSNP
Exclude SNPs from Enrichment analysis
readEnrichment
Read and create EnrichmentRatio object
compareEnrichment
Compare enrichment analysis between two SNPs list
GC
Full Garbage Collection
snpEnrichment-package
~ Overview: SNPs enrichment analysis ~
transcript-dataset
Transcript information in order to check the CIS status for SNPs
SNP-class
Class
"
SNP
"
is.chromosome
Is an Chromosome object
Chromosome-class
Class
Chromosome
toyM1-dataset
Toy dataset with SNP data
summary-methods
Summary method (S4)
toyM2-dataset
Toy dataset with SNP data
writeLD
Linkage Disequilibrium (LD) computation with PLINK
reSample
Compute enrichment analysis on an
Enrichment
object
Enrichment-class
Class
Enrichment