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snpEnrichment (version 1.5-0)

SNPs enrichment analysis

Description

Implements classes and methods for large scale SNP enrichment analysis (e.g. SNPs associated with genes expression in a GWAS signal)

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Install

install.packages('snpEnrichment')

Monthly Downloads

6

Version

1.5-0

License

GPL (>= 2)

Issues

0

Pull Requests

0

Stars

3

Forks

2

Maintainer

Mickael Canouil

Last Published

September 26th, 2014

Functions in snpEnrichment (1.5-0)

initFiles

Initialize files for enrichment analysis
transcript-dataset

Transcript information in order to check the CIS status for SNPs
plot-methods

Plot method (S4) for Enrichment object
readEnrichment

Read and create EnrichmentRatio object
mclapply2

Parallel Versions of lapply with cores and memory control
compareEnrichment

Compare enrichment analysis between two SNPs list
writeLD

Linkage Disequilibrium (LD) computation with PLINK
Chromosome-class

Class Chromosome
print-methods

Print method (S4)
snpEnrichment-package

~ Overview: SNPs enrichment analysis ~
is.chromosome

Is an Chromosome object
Enrichment-class

Class Enrichment
GC

Full Garbage Collection
excludeSNP

Exclude SNPs from Enrichment analysis
is.enrichment

Is an Enrichment object
reSample

Compute enrichment analysis on an Enrichment object
EnrichSNP-class

Class "EnrichSNP"
toyEnrichment-dataset

Toy dataset with SNP data
snpEnrichment-internal

~ Internal: snpEnrichment objects and methods ~