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snpEnrichment (version 1.5-0)
SNPs enrichment analysis
Description
Implements classes and methods for large scale SNP enrichment analysis (e.g. SNPs associated with genes expression in a GWAS signal)
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Install
install.packages('snpEnrichment')
Monthly Downloads
111
Version
1.5-0
License
GPL (>= 2)
Issues
0
Pull Requests
0
Stars
3
Forks
2
Repository
https://github.com/mcanouil/snpEnrichment
Maintainer
Mickael Canouil
Last Published
September 26th, 2014
Functions in snpEnrichment (1.5-0)
Search functions
initFiles
Initialize files for enrichment analysis
transcript-dataset
Transcript information in order to check the CIS status for SNPs
plot-methods
Plot method (S4) for
Enrichment
object
readEnrichment
Read and create EnrichmentRatio object
mclapply2
Parallel Versions of
lapply
with cores and memory control
compareEnrichment
Compare enrichment analysis between two SNPs list
writeLD
Linkage Disequilibrium (LD) computation with PLINK
Chromosome-class
Class
Chromosome
print-methods
Print method (S4)
snpEnrichment-package
~ Overview: SNPs enrichment analysis ~
is.chromosome
Is an Chromosome object
Enrichment-class
Class
Enrichment
GC
Full Garbage Collection
excludeSNP
Exclude SNPs from Enrichment analysis
is.enrichment
Is an Enrichment object
reSample
Compute enrichment analysis on an
Enrichment
object
EnrichSNP-class
Class
"
EnrichSNP
"
toyEnrichment-dataset
Toy dataset with SNP data
snpEnrichment-internal
~ Internal: snpEnrichment objects and methods ~