snpRF (version 0.3)

plot.snpRF: Plot method for snpRF objects

Description

Plot the error rates or MSE of a snpRF object

Usage

## S3 method for class 'snpRF':
plot(x, type="l", main=deparse(substitute(x)), ...)

Arguments

x

an object of class snpRF.

type

type of plot.

main

main title of the plot.

...

other graphical parameters.

Value

• Invisibly, the error rates or MSE of the snpRF object. If the object has a non-null test component, then the returned object is a matrix where the first column is the out-of-bag estimate of error, and the second column is for the test set.

See Also

snpRF

Examples

data(snpRFexample)
plot(snpRF(x.autosome=autosome.snps,x.xchrom=xchrom.snps,
           xchrom.names=xchrom.snps.names,x.covar=covariates,
           y=phenotype,keep.forest=TRUE), log="y")