example-new


The file <code>example-new.txt</code> contains some signal intensity data for
testing and comparing genotype scoring algorithms


datasets

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

David Clayton

snpStats

SnpMatrix and XSnpMatrix classes and methods

example-new function

This is a text file containing data on 99 SNPs for 1550 DNA
  samples. One line of data appears for each SNP, starting with the
  SNP name and followed by 1550 pairs of intensity values. There is a
  header line containing variable names, with intensities labelled
  as <code>xxxxA</code> and <code>xxxxB</code>, where <code>xxxx</code> is the sample
  name.

Format

These data were originally distributed with the "Illuminus"
  genotype scoring software from the Wellcome Trust
  Sanger Institute: 
  <a href="http://www.sanger.ac.uk/resources/software/illuminus/">http://www.sanger.ac.uk/resources/software/illuminus/</a>

Source

The file <code>example-new.txt</code> contains some signal intensity data for
testing and comparing genotype scoring algorithms

example-new: An example of intensity data for SNP genotyping

Description

Arguments

Format

Source

Details