filter.rules

An object of class <code>"ImputationRules"</code> containing
    a set of imputation rules

rules

The names of the SNPs whose
    removal is to be investigated

snps.excluded

If <code>TRUE</code>, the names of the imputed SNPs which
    would be lost by removal of the SNPs listed in
    <code>snps.excluded</code>. If <code>FALSE</code>, the names of the imputed SNPs
  which would <em>not</em> be lost are returned

exclusions


Determine which imputation rules are broken by removal of some SNPs from
a study. This function is needed because, when if it emerges that
genotyping of some SNPs is not reliable, necessitating their removal from
study, we would also wish to remove any SNPs imputed on the basis of
these unreliable SNPs.


models

regression

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

David Clayton

snpStats

SnpMatrix and XSnpMatrix classes and methods

filter.rules function

Determine which imputation rules are broken by removal of some SNPs from
a study. This function is needed because, when if it emerges that
genotyping of some SNPs is not reliable, necessitating their removal from
study, we would also wish to remove any SNPs imputed on the basis of
these unreliable SNPs.

filter.rules: Filter a set of imputation rules

Description

Usage

Arguments

Value

See Also

Examples