ld.example

ceph.1mb

yri.1mb

support.ld


  This R data file contains data from the International HapMap project,
  concerning 603 SNPs spanning a one megabase region on chromosome 22,
  in a sample of Europeans and a sample of Africans


datasets

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

David Clayton

snpStats

SnpMatrix and XSnpMatrix classes and methods

ld.example function

There are three objects in the file:
  <ul>
<li> <code>ceph.1m</code>: A <code>snpMatrix</code> object containing the
    European genotype data
    </li>
<li> <code>yri.1m</code>: A <code>snpMatrix</code> object containing the
    African genotype data
    </li>
<li> <code>support.ld</code>: A dataframe containing details (chromosome
    position etc.</li>
</ul>
 of the 603 SNPs

Format

<a href="http://hapmap.ncbi.nlm.nih.gov">http://hapmap.ncbi.nlm.nih.gov</a>

Source

This R data file contains data from the International HapMap project,
  concerning 603 SNPs spanning a one megabase region on chromosome 22,
  in a sample of Europeans and a sample of Africans

ld.example: Datasets to illustrate calculation of linkage disequilibrium statistics

Description

Arguments

Format

Source

References