joint_population_vector

Internal helper used by <code>symmetrise()</code>, <code>split_matrix()</code> and
<code>per_capita()</code> to align a user-supplied <code>survey_pop</code> data frame with the
participant strata of a contact matrix. The user provides one column per
grouping (named after the grouping) plus <code>population</code>; the helper joins
onto the canonical tuple ordering (column-major over the participant axes,
matching <code><a href="/link/matrix()?package=socialmixr&version=0.7.0" data-mini-rdoc="socialmixr::matrix()">matrix()</a></code>'s reshape) and returns the population in that order.
Works for any number of groupings, including single-grouping (age-only)
matrices.

internal

Methods for sampling contact matrices from diary data for
use in infectious disease modelling, as discussed in Mossong et al.
(2008) <doi:10.1371/journal.pmed.0050074>.

Sebastian Funk

socialmixr

Social Mixing Matrices for Infectious Disease Modelling

Lander Willem

Hugo Gruson

Nicholas Tierney

Maria Bekker-Nielsen Dunbar

Carl A. B. Pearson

Sam Clifford

Christopher Jarvis

Alexis Robert

Niel Hens

Pietro Coletti

Lloyd Chapman

joint_population_vector function

<dl><dt>survey_pop</dt>
<dd>a data frame with one column named after each grouping
of <code>matrix</code> plus a <code>population</code> column</dd>
<dt>matrix</dt>
<dd>the rank-<code>2K</code> contact matrix</dd>
<dt>groupings</dt>
<dd>the list of grouping triples stored on the
<code>contact_matrix</code> object</dd></dl>

Arguments

Internal helper used by <code>symmetrise()</code>, <code>split_matrix()</code> and
<code>per_capita()</code> to align a user-supplied <code>survey_pop</code> data frame with the
participant strata of a contact matrix. The user provides one column per
grouping (named after the grouping) plus <code>population</code>; the helper joins
onto the canonical tuple ordering (column-major over the participant axes,
matching <code><a href='https://rdrr.io/r/base/matrix.html'>matrix()</a></code>'s reshape) and returns the population in that order.
Works for any number of groupings, including single-grouping (age-only)
matrices.

Resolve a survey population to a vector aligned with the matrix strata — joint_population_vector

<dl>

<dt>survey_pop</dt>
<dd>a data frame with one column named after each grouping
of <code>matrix</code> plus a <code>population</code> column</dd>


<dt>matrix</dt>
<dd>the rank-<code>2K</code> contact matrix</dd>


<dt>groupings</dt>
<dd>the list of grouping triples stored on the
<code>contact_matrix</code> object</dd>

</dl>

Resolve a survey population to a vector aligned with the matrix strata

joint_population_vector: Resolve a survey population to a vector aligned with the matrix strata

Description

Usage

Value

Arguments