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soilDB (version 2.8.1)

Soil Database Interface

Description

A collection of functions for reading soil data from U.S. Department of Agriculture Natural Resources Conservation Service (USDA-NRCS) and National Cooperative Soil Survey (NCSS) databases.

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Version

Install

install.packages('soilDB')

Monthly Downloads

1,717

Version

2.8.1

License

GPL (>= 3)

Homepage

https://ncss-tech.github.io/soilDB/

Maintainer

Andrew Brown

Last Published

January 9th, 2024

Functions in soilDB (2.8.1)

Graphical Description of US Soil Taxonomy Soil Temperature Regimes

createStaticNASIS

Create a memory or file-based instance of NASIS database

estimateColorMixture

Estimate color mixtures using weighted average of CIELAB color coordinates

Create local NASIS database connection

Web Coverage Services Details

Query a NASIS DBIConnection

Create a SQLite database or GeoPackage from one or more SSURGO Exports

Get SSURGO ZIP files from Web Soil Survey 'Download Soils Data'

.get_SRI_gdb_names

matching helper

SoilWeb_spatial_query

Get SSURGO Data via Spatial Query

fetchNASISWebReport

Get component tables from NASIS Web Reports

Query data from Kellogg Soil Survey Laboratory Data Mart via Soil Data Access or local SQLite snapshot

Get a pedon or component data SoilProfileCollection from NASIS

get_component_from_GDB

Get a SoilProfileCollection from a SSURGO file geodatabase

fetchNASISLabData

Get NCSS Pedon laboratory data from NASIS

summarizeSoilTemperature

Get data from Henry Mount Soil Temperature and Water Database

Estimate Soil Temperature Regime

Get a SoilProfileCollection from a PedonPC v.5 database

Get Kellogg Soil Survey Laboratory Data from SoilWeb snapshot

Get Official Series Descriptions and summaries from SoilWeb API

Filter KSSL Geochemical Table

Fetch Soil Inventory Resource (SRI) for USFS Region 6

Get vegetation plot data from local NASIS database

fetchSDA_spatial

Get Spatial Data from Soil Data Access by mukey, nationalmusym or areasymbol

format_SQL_in_statement

Format vector of values into a string suitable for an SQL IN statement.

Get SoilGrids 2.0 Property Estimates for Points or Spatial Extent

Get Daily Climate Data from USDA-NRCS SCAN (Soil Climate Analysis Network) Stations

getHzErrorsNASIS

Get Logic Errors in NASIS/PedonPC Pedon Horizon

Get Rapid Carbon Assessment (RaCA) data

get_component_from_SDA

Get SSURGO/STATSGO2 Mapunit Data from Soil Data Access

Get Global Historical Climatology Network Daily (GHCND) data from NOAA API

get_RMF_from_NASIS_db

Get RMF data from local NASIS

get_NASIS_table_key_by_name

Get a NASIS table key by type and table name

get_EDIT_ecoclass_by_geoUnit

Get Ecological Dynamics Information Tool (EDIT) ecological sites by catalog (ESD/ESG) and MLRA

get_NASIS_table_name_by_purpose

Get NASIS 7 Physical Table Names

Get Official Series Description Data from JSON, HTML or TXT sources

get_SDA_coecoclass

Get mapunit ecological sites from Soil Data Access

get_NASIS_metadata

Get NASIS Metadata (Domain, Column and Choice Lists)

get_NOAA_stations_nearXY

Get NOAA station data near a given latitude and longitude

get_NASIS_table_metadata

Get NASIS Table Metadata (Table and Column Descriptions)

get_SDA_cosurfmorph

Get Geomorphic/Surface Morphometry Data from Soil Data Access

get_SDA_interpretation

Get map unit interpretations from Soil Data Access by rule name

get_SDA_pmgroupname

Get map unit parent material group information from Soil Data Access

get_SDA_muaggatt

Get map unit aggregate attribute information from Soil Data Access

Get Soil Inventory Resource (SRI) for USFS Region 6

get_SDV_legend_elements

Get Soil Data Viewer Attribute Information

get_SDA_metrics

Get Soil Data Access, Lab Data Mart and Web Soil Survey Usage Metrics

get_SDA_property

Get map unit properties from Soil Data Access

Get map unit hydric soils information from Soil Data Access

get_extended_data_from_NASIS_db

Get accessory tables and summaries from a local NASIS Database

get_ecosite_history_from_NASIS_db

Get Site Ecological Site History

get_cosoilmoist_from_NASIS

Get the Component Soil Moisture Tables

get_extended_data_from_pedon_db

Get accessory tables and summaries from a local pedonPC Database

get_component_data_from_NASIS_db

Get component data from a local NASIS Database

get_colors_from_pedon_db

Get Soil Color Data from a PedonPC Database

get_comonth_from_NASIS_db

Get component month data from a local NASIS Database

get_hz_data_from_pedon_db

Get Horizon Data from a PedonPC Database

get_mapunit_from_NASIS

Get Legend, Mapunit and Legend Mapunit Area Overlap Tables

get_veg_data_from_NASIS_db

Get vegetation data from a local NASIS Database

get_text_notes_from_NASIS_db

Get text note data from a local NASIS Database

get_site_data_from_NASIS_db

Get Site Data from a local NASIS Database

get_labpedon_data_from_NASIS_db

Get lab pedon data from a local NASIS Database

get_colors_from_NASIS_db

Get Soil Color Data from a local NASIS Database

get_soilseries_from_NASIS

Get records from the Series Classification (SC) database

get_veg_from_AK_Site

Get Vegetation Data from an AK Site Database

get_lablayer_data_from_NASIS_db

Get lab pedon layer data from a local NASIS Database

local_NASIS_defined

Check for presence of nasis_local ODBC data source

make_EDIT_service_URL

Make Ecological Dynamics Interpretive Tool (EDIT) web services URL

Get Map Unit Key (mukey) grid from SoilWeb Web Coverage Service (WCS)

Generate chunk labels for splitting data

get_hz_data_from_NASIS_db

Get Horizon Data from a local NASIS Database

get_site_data_from_pedon_db

Get Site Data from a PedonPC Database

get_veg_other_from_MT_veg_db

Get cover composition data from a Montana RangeDB database

NASIS 7 Metadata

get_veg_from_MT_veg_db

Get Site and Plot-level Data from a Montana RangeDB database

Example SoilProfilecollection Objects Returned by fetchNASIS.

Get the soilDB environment used for storing error messages and quality control output

get_veg_species_from_MT_veg_db

Get species-level Data from a Montana RangeDB database

get_veg_from_NPS_PLOTS_db

Get Vegetation Data from an NPS PLOTS Database

simplifyArtifactData

Simplify Coarse Fraction Data

Post-process Well-Known Text from Soil Data Access

Get SoilWeb 800m Major Component Soil Taxonomy Grids

Retrieve Soil Series Extent Maps from SoilWeb

Get 30m or 270m gridded soil soil color data from SoilWeb Web Coverage Service (WCS)

Soil Database Interface

Convert coded values returned from NASIS and SDA queries into human-readable values

Get "siblings" and "cousins" for a given soil series

Timeline of US Published Soil Surveys

Parse contents of a web report, based on supplied arguments.

simplifyColorData

Simplify Color Data by ID

Compute Water Day and Year

NASIS_table_column_keys

NASIS 7 Tables, Columns and Foreign Keys

Query Soil Data Access

NASISChoiceList

Work with NASIS Choice Lists

Query USDA-ARS ROSETTA Model API

Develop a Water Retention Curve from KSSL Data

Get 800m gridded soil properties from SoilWeb ISSR-800 Web Coverage Service (WCS)

SDA_spatialQuery

Query Soil Data Access by spatial intersection with supplied geometry

Search full text of Official Series Description on SoilWeb

SCAN_SNOTEL_metadata

Get SCAN and SNOTEL Station Metadata

NASISDomainsAsFactor

Get/Set Options for Encoding NASIS Domains as Factors