df2solar

A data frame that containts both phenotype and pedigree data.

A character with path to a directory, where SOLAR files to be created.

(optional) A kinship matrix to be exported.

kinship

A character with file name of SOLAR file to store the kinship matrix.

kin2.gz

Logical, indicating where pedigree IDs (FAM or FAMID) to be sorted.
   The default value is TRUE.

sort.ped


The function exports phenotype and pedigree data from R to SOLAR.


SOLAR is the standard software program to perform linkage and
association mappings of the quantitative trait loci (QTLs) in pedigrees of
arbitrary size and complexity. This package allows the user to exploit the
variance component methods implemented in SOLAR. It automates such routine
operations as formatting pedigree and phenotype data. It also parses the model
output and contains summary and plotting functions for exploration of the
results. In addition, solarius enables parallel computing of the linkage and
association analyses, that makes the calculation of genome-wide scans more
efficient. See <http://solar.txbiomedgenetics.org/> for more information about
SOLAR.

df2solar: Export phenotype and pedigree data into SOLAR files

Description

Usage

Arguments

Details