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somaticflags

An R data package containing a list of genes which are frequently mutated in somatic cancer datasets but are unlikely to drive disease

Table of Contents

Installation

install.packages("somaticflags")

Quick Start

library(somaticflags)

# List Gene Names
somaticflags

# Print a dataframe describing the source of each somatic flag
somaticflags_df

Data

If not using R, you can download our list of somaticflags here

GeneSourceReason
TTN10.1186/s12920-014-0064-y;10.1038/nature12213TOP20FLAGS;OTHER
MUC1610.1186/s12920-014-0064-y;10.1038/nature12213TOP20FLAGS;OTHER
OBSCN10.1186/s12920-014-0064-yTOP20FLAGS
AHNAK210.1186/s12920-014-0064-yTOP20FLAGS
SYNE110.1186/s12920-014-0064-yTOP20FLAGS
FLG10.1186/s12920-014-0064-yTOP20FLAGS
MUC5B10.1186/s12920-014-0064-yTOP20FLAGS
DNAH1710.1186/s12920-014-0064-yTOP20FLAGS
PLEC10.1186/s12920-014-0064-yTOP20FLAGS
DST10.1186/s12920-014-0064-yTOP20FLAGS
SYNE210.1186/s12920-014-0064-yTOP20FLAGS
NEB10.1186/s12920-014-0064-yTOP20FLAGS
HSPG210.1186/s12920-014-0064-yTOP20FLAGS
LAMA510.1186/s12920-014-0064-yTOP20FLAGS
AHNAK10.1186/s12920-014-0064-yTOP20FLAGS
HMCN110.1186/s12920-014-0064-yTOP20FLAGS
USH2A10.1186/s12920-014-0064-yTOP20FLAGS
DNAH1110.1186/s12920-014-0064-y;10.1038/nature12213TOP20FLAGS;OTHER
MACF110.1186/s12920-014-0064-yTOP20FLAGS
MUC1710.1186/s12920-014-0064-yTOP20FLAGS
OR2G610.1038/nature12213OLFACTORY
OR4C610.1038/nature12213OLFACTORY
OR4M210.1038/nature12213OLFACTORY
OR5L210.1038/nature12213OLFACTORY
OR2T410.1038/nature12213OLFACTORY
OR5D1810.1038/nature12213OLFACTORY
OR4A1510.1038/nature12213OLFACTORY
OR6F110.1038/nature12213OLFACTORY
OR2T3310.1038/nature12213OLFACTORY
OR4S210.1038/nature12213OLFACTORY
OR11L110.1038/nature12213OLFACTORY
OR4M110.1038/nature12213OLFACTORY
OR5T110.1038/nature12213OLFACTORY
OR8J310.1038/nature12213OLFACTORY
OR51B210.1038/nature12213OLFACTORY
OR8H210.1038/nature12213OLFACTORY
OR9G910.1038/nature12213OLFACTORY
OR4N210.1038/nature12213OLFACTORY
OR10G910.1038/nature12213OLFACTORY
OR5I110.1038/nature12213OLFACTORY
OR14A1610.1038/nature12213OLFACTORY
OR2M210.1038/nature12213OLFACTORY
OR5B1210.1038/nature12213OLFACTORY
OR5M910.1038/nature12213OLFACTORY
OR4C1110.1038/nature12213OLFACTORY
OR1C110.1038/nature12213OLFACTORY
OR4N410.1038/nature12213OLFACTORY
OR5J210.1038/nature12213OLFACTORY
OR2G310.1038/nature12213OLFACTORY
OR10G810.1038/nature12213OLFACTORY
OR5W210.1038/nature12213OLFACTORY
OR2T310.1038/nature12213OLFACTORY
OR10AG110.1038/nature12213OLFACTORY
OR4K110.1038/nature12213OLFACTORY
OR2M710.1038/nature12213OLFACTORY
OR4C1210.1038/nature12213OLFACTORY
OR4D510.1038/nature12213OLFACTORY
OR2T110.1038/nature12213OLFACTORY
OR4P410.1038/nature12213OLFACTORY
OR5H1410.1038/nature12213OLFACTORY
OR5F110.1038/nature12213OLFACTORY
OR2T810.1038/nature12213OLFACTORY
OR4C1310.1038/nature12213OLFACTORY
OR5K110.1038/nature12213OLFACTORY
OR4K510.1038/nature12213OLFACTORY
OR2B1110.1038/nature12213OLFACTORY
OR5L110.1038/nature12213OLFACTORY
OR2L810.1038/nature12213OLFACTORY
OR2T1210.1038/nature12213OLFACTORY
OR2T3410.1038/nature12213OLFACTORY
OR8H110.1038/nature12213OLFACTORY
OR5D1610.1038/nature12213OLFACTORY
OR10Q110.1038/nature12213OLFACTORY
OR2M310.1038/nature12213OLFACTORY
OR6K310.1038/nature12213OLFACTORY
OR5T310.1038/nature12213OLFACTORY
OR14C3610.1038/nature12213OLFACTORY
OR5AC210.1038/nature12213OLFACTORY
OR52J310.1038/nature12213OLFACTORY
OR4Q310.1038/nature12213OLFACTORY
OR10A410.1038/nature12213OLFACTORY
OR4C1610.1038/nature12213OLFACTORY
OR8B210.1038/nature12213OLFACTORY
OR5D1410.1038/nature12213OLFACTORY
OR5H610.1038/nature12213OLFACTORY
OR8I210.1038/nature12213OLFACTORY
OR2T210.1038/nature12213OLFACTORY
OR4A1610.1038/nature12213OLFACTORY
OR52E610.1038/nature12213OLFACTORY
OR6N110.1038/nature12213OLFACTORY
OR2AK210.1038/nature12213OLFACTORY
OR2L210.1038/nature12213OLFACTORY
OR4D1110.1038/nature12213OLFACTORY
OR2A510.1038/nature12213OLFACTORY
OR51S110.1038/nature12213OLFACTORY
OR9A210.1038/nature12213OLFACTORY
OR51L110.1038/nature12213OLFACTORY
OR56A410.1038/nature12213OLFACTORY
OR52E210.1038/nature12213OLFACTORY
OR6M110.1038/nature12213OLFACTORY
OR2T1110.1038/nature12213OLFACTORY
OR5M1110.1038/nature12213OLFACTORY
OR4C4610.1038/nature12213OLFACTORY
OR6K210.1038/nature12213OLFACTORY
OR2B310.1038/nature12213OLFACTORY
OR2T610.1038/nature12213OLFACTORY
OR56A110.1038/nature12213OLFACTORY
OR5B210.1038/nature12213OLFACTORY
OR4K1510.1038/nature12213OLFACTORY
OR5AS110.1038/nature12213OLFACTORY
OR8A110.1038/nature12213OLFACTORY
OR4C310.1038/nature12213OLFACTORY
OR4D210.1038/nature12213OLFACTORY
OR8K310.1038/nature12213OLFACTORY
OR8J110.1038/nature12213OLFACTORY
OR4F610.1038/nature12213OLFACTORY
OR8H310.1038/nature12213OLFACTORY
OR1J410.1038/nature12213OLFACTORY
OR52A510.1038/nature12213OLFACTORY
OR8B410.1038/nature12213OLFACTORY
OR51I110.1038/nature12213OLFACTORY
OR2T3310.1038/nature12213OLFACTORY
CSMD310.1038/nature12213OTHER
CNTNAP510.1038/nature12213OTHER
RYR210.1038/nature12213OTHER
LRP1B10.1038/nature12213OTHER
CSMD110.1038/nature12213OTHER
CNTNAP210.1038/nature12213OTHER
RYR310.1038/nature12213OTHER
NRXN110.1038/nature12213OTHER
CNTNAP410.1038/nature12213OTHER
MUC410.1038/nature12213OTHER
PCLO10.1038/nature12213OTHER
LRP210.1038/nature12213OTHER
DNAH510.1038/nature12213OTHER
CNTN510.1038/nature12213OTHER
PARK210.1038/nature12213OTHER
BAGE210.1038/nature12213OTHER
TPTE10.1038/nature12213OTHER

Genelist compiled from:

  1. Mutational heterogeneity in cancer and the search for new cancer-associated genes (Lawrence et al. 2013)
  2. FLAGS, frequently mutated genes in public exomes (Shyr et al. 2014)
    • top 20 flags included

Please cite both publications if you find this package useful.

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Version

Install

install.packages('somaticflags')

Monthly Downloads

113

Version

0.1.0

License

MIT + file LICENSE

Issues

1

Pull Requests

0

Stars

1

Forks

0

Maintainer

Sam El-Kamand

Last Published

July 9th, 2024

Functions in somaticflags (0.1.0)

somaticflags

Somatic Flags Dataset
somaticflags_df

Somatic Flags Dataset