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spBayesSurv (version 1.1.7)

Bayesian Modeling and Analysis of Spatially Correlated Survival Data

Description

Provides several Bayesian survival models for spatial/non-spatial survival data: proportional hazards (PH), accelerated failure time (AFT), proportional odds (PO), and accelerated hazards (AH), a super model that includes PH, AFT, PO and AH as special cases, Bayesian nonparametric nonproportional hazards (LDDPM), generalized accelerated failure time (GAFT), and spatially smoothed Polya tree density estimation. The spatial dependence is modeled via frailties under PH, AFT, PO, AH and GAFT, and via copulas under LDDPM and PH. Model choice is carried out via the logarithm of the pseudo marginal likelihood (LPML), the deviance information criterion (DIC), and the Watanabe-Akaike information criterion (WAIC). See Zhou, Hanson and Zhang (2020) .

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Version

Install

install.packages('spBayesSurv')

Monthly Downloads

285

Version

1.1.7

License

GPL (>= 2)

Maintainer

Haiming Zhou

Last Published

May 17th, 2023

Functions in spBayesSurv (1.1.7)

spCopulaDDP

Marginal Bayesian Nonparametric Survival Model via Spatial Copula
survregbayes

Bayesian Semiparametric Survival Models
spCopulaCoxph

Marginal Bayesian Proportional Hazards Model via Spatial Copula
survregbayes2

Bayesian Semiparametric Survival Models
predict.bspline

Evaluate a Cubic Spline Basis
indeptCoxph

Bayesian Proportional Hazards Model
bspline

Generate a Cubic B-Spline Basis Matrix
cox.snell.survregbayes

Cox-Snell Diagnostic Plot
LeukSurv

The Leukemia Survival Data
SpatDensReg

Bayesian Nonparametric Spatially Smoothed Density Estimation
baseline

Stratification effects on baseline functions
frailtyGAFT

Generalized Accelerated Failure Time Frailty Model
GetCurves

Density, Survival, and Hazard Estimates
frailtyprior

Frailty prior specification
SuperSurvRegBayes

Bayesian Semiparametric Super Survival Model
anovaDDP

Bayesian Nonparametric Survival Model