Gryphon data
Fits a (spatially) correlated mixed model, for given correlation parameters
Degrees of freedom extractor
Fit mixed models with given correlation matrix
Interpolated Markov Random Field models
Fitting generalized linear models without initial-value or divergence headaches
Conway-Maxwell-Poisson (COM-Poisson) GLM family
Cauchy correlation function and Cauchy formula term
corrFamily constructor for Interpolated Markov Random Field (IMRF) covariance structure approximating a 2D Matern correlation model.
Pseudo R-squared
Example of yield stability analysis
Leucadendron data
Multiple-Stage False Discovery Rate procedure
Internal functions for procedure using the ((I,0),(Z,X)) block-order
Matern correlation function and Matern formula term.
Loa loa prevalence in North Cameroon, 1991-2001
Random effect with AR(p) (autoregressive of order p) or ARMA(p,q) structure.
Extractors for information criteria such as AIC
S4 classes for structured matrices
ANOVA tables, and likelihood ratio tests of fixed and random effects.
Control of matrix-algebraic methods
Arabidopsis genetic and climatic data
Conversion to input for procedures from lmerTest package
Simulated data set for testing sparse-precision code
Composite random effects
Toy dataset for binomial response
corr_family
objects
Using a corrMatrix argument
Control parameters of the HLfit fitting algorithm
Confidence intervals
Beta-response family object
Fitting autoregressive models
Assessing convergence for fitted models
Matern Correlation Structure as a corSpatial object
Beta-binomial family object
Utilities for regularization of a matrix
Genetic polymorphism in relation to migration in the blackcap
Functions to extract various components of a fit.
corrFamily definition
Fixed-effect terms for dyadic interactions
Using corrFamily constructors and descriptors.
Fits a mixed model, typically a spatial GLMM.
Designing new corrFamily descriptors for parametric correlation families
Interface for parallel computations
Information about numerical problems
Drop all possible single fixed-effect terms from a model
Interface for parallel computations
Prediction from models with nearly-singular covariance matrices
Fixing some parameters
Operations on lists of parameters
Initiate a fit from another fit
Evaluating bootstrap replicates
Specifying correlation structures
Fitting function for fixed- and mixed-effect models with GLM response.
Likelihood ratio test of fixed effects.
Random-effect structures for diallel experiments and other dyadic interactions
Extract matrices from a fit
Freight dataset
Extractors of arguments for functions from package RLRsim
Clear and trustworthy formulas and prior weights
Checking for (quasi-)separation in binomial-response model.
Installing external libraries
Link-linear regression models (LLMs)
Conversion of factor to 0/1 variable
Fitting multivariate responses
Estimation of prediction variance with bootstrap correction
Analyzing multinomial data
Leverage extractor for HLfit objects
Extract information about how an object was obtained
Computation of “square root” of symmetric positive definite matrix
Fitting methods (objective functions maximized)
Scaled distances between unique locations
spaMM options settings
Information matrix
Fit mixed-effects models incorporating pedigrees
Colorful plots of predictions in two-dimensional space.
Controlling optimization strategy through initial values
Residual dispersion model for gaussian and Gamma response
Structure of random effects
Virtual factor for multivariate responses
Prediction from a model fit
Prediction and response variances
Distribution families for Gamma and inverse Gamma-distributed random effects
Alternative negative-binomial family
Masks of seas or lands
Partial-dependence effects and plots
Family function for negative binomial “2” response (including truncated variant).
Residual variance extractor
Seed germination data
Summary and print methods for fit and test results.
Model checking plots for mixed models
Level (Contour) Plots with better aspect ratio control (for geographical maps, at least)
Parallel computations in fits
Extract covariance or correlation components from a fitted model object
Extract model residuals
Parametric bootstrap
Simulate realizations of a fitted model.
Tracking progress of fits
Checking the rank of the fixed-effects design matrix
Family function for GLMs and mixed models with Poisson and zero-truncated Poisson response.
spaMM conventions and differences from related fitting procedures
Salamander mating data
S3 methods of generics defined in other packages
Updates a fit
Welding data set
Data from a resistivity experiment for semiconductor materials.
Selecting interfaces for parallelisation
Lip cancer in Scotland 1975 - 1980
Internal spaMM Functions
Inference in mixed models, in particular spatial GLMMs
A flashy color palette.
Declare corrFamily constructor for use in formula
Structured dispersion models
Applying post-fit procedures on spaMM results
Reduce the size of fitted objects