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spaMM (version 1.7.1)

Mixed Models, Particularly Spatial GLMMs

Description

Inference in mixed models, including GLMMs with spatial correlations and models with non-Gaussian random effects (e.g., Beta Binomial, or negative-binomial mixed models). Heteroskedasticity can further be fitted by a linear model. The algorithms are currently various Laplace approximations methods for ML or REML, in particular h-likelihood and penalized-likelihood methods.

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Version

Install

install.packages('spaMM')

Monthly Downloads

1,913

Version

1.7.1

License

CeCILL-2

Maintainer

Franois Rousset

Last Published

January 21st, 2016

Functions in spaMM (1.7.1)

salamander

Salamander mating data
spaMM.colors

A flashy color palette.
HLCor

Fits a (spatially) correlated mixed model, for given correlation parameters
Predictor

Interface for model formulas
spaMM-internal-migraineLike

Internal spaMM Functions
make_scaled_dist

Scaled Euclidean distances between unique locations
options

spaMM options settings
adjacency

Fitting autoregressive models
arabidopsis

Arabidopsis genetic and climatic data
confint.HLfit

Confidence intervals for fixed-effect parameters
corrHLfit

Fits a mixed model, typically a spatial GLMM.
seeds

Seed germination data
MaternCorr

Matern correlation function.
spaMM.filled.contour

Level (Contour) Plots with better aspect ratio control (for geographical maps, at least)
spaMM

Inference in mixed models, in particular spatial GLMMs
multinomial

Analyzing multinomial data
simulate.HLfit

Simulate realizations of a fitted mixed model.
LRT

Likelihood ratio test of fixed effects.
update.HLfit

Updates an HLCor or HLfit fit
wafers

Data from a resistivity experiment for semiconductor materials.
raster

Raster plots of predicted responses
welding

Welding data set
HLfit

Fit mixed models with given correlation matrix
summary.HLfit

Summary and print methods for fit and test results.
Loaloa

Loa loa prevalence in North Cameroon, 1991-2001
spaMM-Rcpp-internal

Internal spaMM Functions using Rcpp/RcppEigen
scotlip

Lip cancer in Scotland 1975 - 1980
spaMM-internal

Internal spaMM Functions
mapMM

Colorful plots of predicted responses in two-dimensional space.
extractors

Functions to extract various components of a fit
blackcap

Genetic polymorphism in relation to migration in the blackcap
corMatern

Matern Correlation Structure as a corSpatial object
GHK_oneside

Compute GHK estimate of multivariate normal one-sided integral
seaMask

Masks of seas or lands
designL.from.Corr

Computation of square root of correlation matrix
plot.HLfit

Model checking plots for mixed models
fixedLRT

Likelihood ratio test of fixed effects.
predict

Prediction from a model fit.