fitme_body

calc_maxrange

calc_inits_dispPars

calc_inits_ARphi

calc_inits_nu

calc_inits_Auto_rho

calc_inits_geostat_rho

calc_inits

HLfit.obj

%id*id%

alternating

auglinmodfit

Bartlett.robust

Beta

bloc_lambda

calc_beta_w_cov

calc.dlW_deta

calc.dvdloglamMat

calc_invS.X

calc.p_v

calc.w.resid

calc_wAugX

calc_hatval

calc.Pdiag

calc.plot.dims

calcD2hDv2

calcPHI

calc_dispGammaGLM

calcRanefPars

calcTT

calcUniqueGeo

calc_info_crits

calc_invL

calc_invL_coeffs

calc_Sig_from_fitobject

calc_asDmLR_invV_from_fitobject

CBIND

CBIND.matrix

CBIND.Matrix

checkRandLinkS

checkRandLink

checkRespFam

compare.model.structures

computeZAXlist

CondNormfn

corr.notEQL.lambda

create_get_w_h_coeffs

create_get_beta_w_cov

create_get_invColdoldList

create_get_logdispObject

create_get_info_crits

create_get_init_phi

Dim.corMatern

eval.update.call

eval.corrEst.args

generateInitLambda

spaMM_Gamma

getHLfit

get_valid_beta_coefs

HLCor.obj

HL_process.args

HL_strictify

HLframes

Initialize.corMatern

initialize.v_h

intervalStep

iterateSEMSmooth

LRT.corrHL

loglfn.ranU

makenewname

Variogram.corMatern

asStandardFormula

bessel_lnKnu

calc_tXinvS

calcNewCorrs

calcPredVar

calcResidVar

calc_beta_cov

calc_dvdlogphiMat

calc_invColdoldList

calc_logdisp_cov

canonizeRanPars

clean_cs

checkDistMatrix

coef.corMatern

coef<-.corMatern

corFactor.corMatern

corMatrix.corMatern

corrHLfit_body

corrMM.LRT

d2mudeta2fn

DEPARSE

dispFn

calc_CARdispGammaGLM

dispInv

extract.check.coords

findOffset

findSpatial

parseBars

 internal

spaMM-internal

Inference in mixed models, including GLMMs with spatial correlations and models with non-Gaussian random effects (e.g., Beta Binomial, or negative-binomial mixed models). Heteroscedasticity can further be fitted by a linear model. The algorithms are currently various Laplace approximations methods for ML or REML, in particular h-likelihood and penalized-likelihood methods.

spaMM-internal: Internal spaMM Functions

Description

Arguments

Details