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spaMM (version 2.0.0)

Mixed-Effect Models, Particularly Spatial Models

Description

Inference in mixed-effect models, including generalized linear mixed models with spatial correlations and models with non-Gaussian random effects (e.g., Beta Binomial, or negative-binomial mixed models). Variation in residual variance is handled and can be modelled as a linear model. The algorithms are currently various Laplace approximations methods for likelihood or restricted likelihood, in particular h-likelihood and penalized-likelihood methods.

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Version

Install

install.packages('spaMM')

Monthly Downloads

1,720

Version

2.0.0

License

CeCILL-2

Maintainer

Franois Rousset

Last Published

April 6th, 2017

Functions in spaMM (2.0.0)

HLfit

Fit mixed models with given correlation matrix
Loaloa

Predictor

LRT

COMPoisson-internal

Internal Functions for COM-Poisson family
COMPoisson

MaternCorr

PLS-internals

Internal, Experimental Functions for procedure using the ((I,0),(Z,X)) block-order
spaMM_glm.fit

Fitting generalized linear models without initial-value or divergence headaches
HLCor

corrMatrix

Using a corrMatrix argument
designL.from.Corr

arabidopsis

adjacency

make_scaled_dist

Scaled distances between unique locations
mapMM

blackcap

confint.HLfit

fixedLRT

freight

Freight dataset
multinomial

Analyzing multinomial data
negbin

salamander

scotlip

Lip cancer in Scotland 1975 - 1980
plot.HLfit

predict

spaMM

Inference in mixed models, in particular spatial GLMMs
spaMM.filled.contour

Level (Contour) Plots with better aspect ratio control (for geographical maps, at least)
extractors

fitme

options

spaMM options settings
phiHGLM

Fitting random effects in the residual dispersion model
simulate.HLfit

spaMM-conventions

spaMM conventions and differences from related fitting procedures
summary.HLfit

sym_eigen

update.HLfit

wafers

Data from a resistivity experiment for semiconductor materials.
spaMM.colors

stripHLfit

seaMask

seeds

welding

corMatern

Matern Correlation Structure as a corSpatial object
corrHLfit

good-practice

Clear and trustworthy formulas
inverse.Gamma

spaMM-Rcpp-internal

Internal spaMM Functions using Rcpp/RcppEigen
spaMM-internal

Internal spaMM Functions