spade (version 1.20.0)

SPADE.read.FCS: Read an FCS File

Description

Read and FCS file, correcting problematic column names and applying compensation if requested. A wrapper around read.FCS.

Usage

SPADE.read.FCS(file, comp = TRUE, verbose = FALSE, ...)

Arguments

file

FCS filename

comp

boolean indicating whether to apply compensation

verbose

boolean indicating whether to not suppress warnings from upstream FCS file reader.

...

additional arguments are passed through to read.FCS

Value

a flowFrame object.

Details

A wrapper around read.FCS that copies FCS parameter "short name" to description when none is supplied, and applies compensation matrix stored in the SPILL or SPILLOVER keyword.

See Also

read.FCS

Examples

	fcs <- SPADE.read.FCS(system.file(file.path("extdata","SimulatedRawData.fcs"), package = "spade"))