spam is a collection of functions for sparse matrix
What is spam and what is it not:
While Matrix seems an overshoot of classes and SparseM
focuses mainly on regression type problem, we provide a minimal set of
sparse matrix functions fully functional for everyday spatial statistics
life. There is however some emphasize on Markov chain Monte Carlo type
calculations within the framework of (Gaussian) Markov random fields.
Emphasis is given on a comprehensive, simple, tutorial structure of the
code. The code is S4 based but (in a tutorial spirit) the functions are
in a S3 structure visible to the user (exported via NAMESPACE).
There exist many methods for sparse matrices that work identically as in
the case of ordinary matrices. All the methods are discussed in the help
and can be accessed directly via a *.spam concatenation to the
function. For example, help(chol.spam) calls the help
directly. We deliberately avoided aliases according to analogue helps from the
Sparseness is used when handling large matrices. Hence, care has been
used to provide efficient and fast routines. Essentially, the functions
do not transform the sparse structure into full matrices to use standard
(available) functionality, followed by a back transform. We agree, more
operators, functions, etc. should eventually be implemented.
The packages fields and spam are closely linked.
Reinhard Furrer, Stephan R. Sain (2010).
"spam: A Sparse Matrix R Package with Emphasis on MCMC
Methods for Gaussian Markov Random Fields.",
Journal of Statistical Software, 36(10), 1-25,
See spam.class for a detailed class description,
spam and spam.ops for creation,
coercion and algebraic operations.