segment_t1_fsl

This function requires a working installation of FSL and uses the fslr
package. You may need to specify the fsl install directory, eg:
'options(fsl.path = "/path/to/fsl")'

Tools for reading, visualising and processing Magnetic Resonance
Spectroscopy data. The package includes methods for spectral fitting: Wilson
(2021) <DOI:10.1002/mrm.28385> and spectral alignment: Wilson (2018)
<DOI:10.1002/mrm.27605>.

Martin Wilson

spant

MR Spectroscopy Analysis Tools

Yong Wang

John Muschelli

segment_t1_fsl function

<dl><dt>mri_path</dt>
<dd>path to the volumetric T1 data.</dd>
<dt>deface</dt>
<dd>deface the input T1 data before analysis. Defaults to TRUE.</dd>
<dt>bet_fit</dt>
<dd>fractional intensity threshold for bet brain extraction.
Values should be between 0 and 1. Defaults to 0.5 with smaller values giving
larger brain estimates.</dd></dl>

Arguments

Segment T1 weighted MRI data using FSL FAST and write to file. Runs deface
and bet as preprocessing steps by default. — segment_t1_fsl

<dl>

<dt>mri_path</dt>
<dd>path to the volumetric T1 data.</dd>


<dt>deface</dt>
<dd>deface the input T1 data before analysis. Defaults to TRUE.</dd>


<dt>bet_fit</dt>
<dd>fractional intensity threshold for bet brain extraction.
Values should be between 0 and 1. Defaults to 0.5 with smaller values giving
larger brain estimates.</dd>

</dl>

segment_t1_fsl: Segment T1 weighted MRI data using FSL FAST and write to file. Runs deface and bet as preprocessing steps by default.

Description

Usage

Arguments