spant (version 3.7.0)

preproc_svs_dataset: Preprocess and perform quality assessment of one or more SVS data sets.

Description

Preprocess and perform quality assessment of one or more SVS data sets.

Usage

preproc_svs_dataset(
  paths,
  labels = NULL,
  output_dir = "spant_analysis",
  exclude_labels = NULL,
  overwrite = FALSE,
  ref_inds = NULL,
  dyn_water_ref_paths = NULL,
  Ntrans = NULL,
  TR = NULL,
  return_results = FALSE
)

Arguments

paths

paths to the MRS data file or IMA directory.

labels

labels to describe each data set.

output_dir

output directory.

exclude_labels

vector of labels of scans to exclude, eg poor quality data.

overwrite

overwrite saved results, defaults to FALSE.

ref_inds

a vector of 1-based indices for any water reference dynamic scans.

dyn_water_ref_paths

paths to interleaved water reference scans.

Ntrans

override the number of transients set in the mrs_data file.

TR

override the TR (in seconds) set in the mrs_data file.

return_results

function will return key outputs, defaults to FALSE.