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spathial (version 0.1.2)

Evolutionary Analysis

Description

A generic tool for manifold analysis. It allows to infer a relevant transition or evolutionary path which can highlights the features involved in a specific process. 'spathial' can be useful in all the scenarios where the temporal (or pseudo-temporal) evolution is the main problem (e.g. tumor progression). The algorithm for finding the principal path is described in: Ferrarotti et al., (2019) ."

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Version

Install

install.packages('spathial')

Monthly Downloads

25

Version

0.1.2

License

GPL-3

Maintainer

Erika Gardini

Last Published

April 10th, 2020

Functions in spathial (0.1.2)

spathialPrefiltering

Prefilter data
spathialPlot

2D spathial
spathialStatistics

Correlation
spathialWay

Compute Principal Path
spathialBoundaryIds

Select starting and ending points
spathialLabels

Find labels