spatialAtomizeR (version 0.2.5)

run_nimble_model: Run NIMBLE Model with Diagnostics

Description

Run NIMBLE Model with Diagnostics

Usage

run_nimble_model(
  constants,
  data,
  inits,
  sim_metadata = NULL,
  model_code,
  niter = 50000,
  nburnin = 30000,
  nchains = 2,
  thin = 10,
  save_plots = TRUE,
  output_dir = NULL
)

Value

List containing MCMC samples, summary, and convergence diagnostics

Arguments

constants

List of model constants

data

List of data

inits

List of initial values

sim_metadata

List with simulation metadata (optional)

model_code

NIMBLE code object

niter

Number of MCMC iterations (default: 50000)

nburnin

Number of burn-in iterations (default: 30000)

nchains

Number of MCMC chains (default: 2)

thin

Thinning interval (default: 10)

save_plots

Logical, whether to save diagnostic plots (default: TRUE)

output_dir

Directory for saving plots (default: NULL)