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spatstat.explore (version 3.5-2)

plot.scan.test: Plot Result of Scan Test

Description

Computes or plots an image showing the likelihood ratio test statistic for the scan test, or the optimal circle radius.

Usage

# S3 method for scan.test
plot(x, ..., what=c("statistic", "radius"),
               do.window = TRUE)

# S3 method for scan.test as.im(X, ..., what=c("statistic", "radius"))

Arguments

Value

The value of as.im.scan.test is a pixel image (object of class "im"). The value of plot.scan.test is NULL.

Details

These functions extract, and plot, the spatially-varying value of the likelihood ratio test statistic which forms the basis of the scan test.

If the test result X was based on circles of the same radius r, then as.im(X) is a pixel image of the likelihood ratio test statistic as a function of the position of the centre of the circle.

If the test result X was based on circles of several different radii r, then as.im(X) is a pixel image of the profile (maximum value over all radii r) likelihood ratio test statistic as a function of the position of the centre of the circle, and as.im(X, what="radius") is a pixel image giving for each location \(u\) the value of r which maximised the likelihood ratio test statistic at that location.

The plot method plots the corresponding image.

See Also

scan.test, scanLRTS

Examples

Run this code
   online <- interactive()
   Nsim <- if(online) 19 else 2
   r <- if(online) seq(0.04, 0.1, by=0.01) else c(0.05, 0.1)
   a <- scan.test(redwood, r=r, method="poisson", nsim=Nsim)
   plot(a)
   as.im(a)
   plot(a, what="radius")

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