Learn R Programming

⚠️There's a newer version (3.3-6) of this package.Take me there.

spatstat.geom (version 2.3-0)

Geometrical Functionality of the 'spatstat' Family

Description

Defines types of spatial data such as point patterns, mainly in two dimensions, but also in higher dimensions. Provides class support, and functions for geometrical operations on spatial data, used in the 'spatstat' family of packages. Excludes spatial data on a linear network, which are covered by the separate package 'spatstat.linnet'.

Copy Link

Version

Install

install.packages('spatstat.geom')

Monthly Downloads

79,548

Version

2.3-0

License

GPL (>= 2)

Maintainer

Adrian Baddeley

Last Published

October 9th, 2021

Functions in spatstat.geom (2.3-0)

Extract Subset of Line Segment Pattern

S3 Group Generic methods for List of Images

Fill Plot With Texture

Apply Affine Transformation

Extract Subset of Multidimensional Point Pattern

Apply Affine Transformation To Pixel Image

Extract or Replace Subset of Point Pattern

as.data.frame.owin

Convert Window to Data Frame

as.data.frame.im

Convert Pixel Image to Data Frame

Apply Affine Transformation To Window

as.data.frame.psp

Coerce Line Segment Pattern to a Data Frame

as.data.frame.ppp

Coerce Point Pattern to a Data Frame

Difference of Disc Areas

Convert Data to Three-Dimensional Box

Extract.hyperframe

Extract or Replace Subset of Hyperframe

Extract.anylist

Extract or Replace Subset of a List of Things

Convert Data To Layered Object

Convert to Pixel Image

Extract or Change the Window of a Spatial Object

Convert Data To Class owin

Convert Data To Tessellation

Convert a Window to a Polygonal Window

Apply Affine Transformation To Point Pattern

Extract Window of Spatial Object

Interactively Add Points

Interactively Define a Polygon

Interactively Measure Distance

Apply Function to Every Neighbourhood in a Point Pattern

Combine Two Line Segment Patterns

Distance to Boundary of Window

Multi-Dimensional Box

Apply Affine Transformation To Line Segment Pattern

Extract or Replace Subset of a List of Spatial Objects

Extract.splitppp

Extract or Replace Sub-Patterns

Intersect Infinite Straight Lines with a Window

Convert Data to Multi-Dimensional Box

List of Objects

as.data.frame.hyperframe

Coerce Hyperframe to Data Frame

as.data.frame.tess

Convert Tessellation to Data Frame

Check Whether Image Contains NA Values

Contour plot of pixel image

Buffer Distance Tessellation

Convert Data to Hyperframe

Connected Components of Tiles of a Tessellation

Pairwise distances between two different three-dimensional point patterns

crossdist.default

Pairwise distances between two different sets of points

Pairwise Distances Between Two Different Multi-Dimensional Point Patterns

Pairwise distances between two different point patterns

Geometrical Calculations for Multi-Dimensional Box

Distance to Boundary of Window

Convert Pixel Image to Matrix or Array

Convert Pixel Image to Function of Coordinates

Convert Pixel Image to Matrix

Colour Lookup Tables

Pixel Image Approximation of a Window

Extract or Assign Colour Values in a Colour Map

Pairwise distances between two different line segment patterns

as.hyperframe.ppx

Extract coordinates and marks of multidimensional point pattern

Crossing Points of Two Line Segment Patterns

Areas of Morphological Dilations

Convert Line Segment Pattern to Binary Pixel Mask

Morphological Dilation

Create Colour Scheme for a Range of Numbers

Border Region of a Window

Elliptical Window.

Distance Map of Window

Diameter of a Window

Distance Map of Point Pattern

Endpoints of Line Segment Pattern

Circular Window

Apply Function to Image Broken Down by Factor

Apply a Function to a Point Pattern Broken Down by Factor

Distance to Boundary of Window

Interactively Define a Rectangle

Test Whether Objects Are Compatible

Subdivide a Window or Tessellation using a Set of Lines

Convex Hull of Points

Test Whether Pixel Images Are Compatible

Close Triples of Points

Array of Contour Plots

Weil's Convexifying Operation

edit.hyperframe

Invoke Text Editor on Hyperframe

Invoke Text Editor on Spatial Data

Area of Part of Disc

Morphological Closing

Fourier Basis Functions

Extract or Replace Subset of a List of Things

Extract Subset of Window

as.function.owin

Convert Window to Indicator Function

Extract or Change the Containing Rectangle of a Spatial Object

Extract or Replace Subset of Tessellation

delaunayDistance

Distance on Delaunay Triangulation

extrapolate.psp

Extrapolate Line Segments to Obtain Infinite Lines

Convert Data To Class ppp

Weighted Empirical Cumulative Distribution Function

as.function.tess

Convert a Tessellation to a Function

Farthest Distance to Boundary of Window

Exchange X and Y Coordinates

Distance Metric Defined by Convex Set

Add margins to box in any dimension

Convert Data To Class psp

Find Largest Circle Inside Window

Make Objects Compatible

Add margins to rectangle

Infinite Straight Lines

Integral of a Pixel Image

Intensity of a Dataset or a Model

Smallest Enclosing Circle

Level Set of a Pixel Image

Test Whether Marks Are Present

Intersection, Union or Set Subtraction of Windows

Intersection Of Boxes Of Arbitrary Dimension

Test Whether A Point Pattern is Marked

Convert and Compare Colours in Different Formats

Three-Dimensional Box

Determine A Common Spatial Domain And Pixel Resolution

Spatial Function Class

Extract.layered

Extract or Replace Subset of a Layered Object

Extract Subset of Image

Reset Values in Subset of Image

Minkowski Sum of Windows

First or Last Part of a Spatial Pattern

complement.owin

Take Complement of a Window

Convolution of Pixel Images

Generate a Default Pattern of Dummy Points

Area of a Window

Apply Geometrical Transformation To Tessellation

Difference of Disc Areas

Orientation Angles of Line Segments

Convert List of Two-Dimensional Spatial Objects

Delaunay Triangulation of Point Pattern

Hexagonal Grid or Tessellation

Create a Pixel Image Object

Test Whether Points Are Inside A Multidimensional Box

Apply Function Pixelwise to List of Images

Make Pixel Images Compatible

bounding.box.xy

Convex Hull of Points

Close Pairs of Points in 3 Dimensions

Close Pairs of Points

Centroid of a window

cbind.hyperframe

Combine Hyperframes by Rows or by Columns

Bounding Box of a Window, Image, or Point Pattern

Heat Kernel for a One-Dimensional Rod

Test Whether Points Are Inside A Window

Hyper Data Frame

Intensity of a Multidimensional Space-Time Point Pattern

Test Whether An Object Is Empty

Test Whether An Object Is A Pixel Image

Determine Whether One Window is Contained In Another

Empirical Intensity of Point Pattern

Distance for a Point Pattern Matching

Determine Type of Window

Connected components

Concatenate x,y Coordinate Vectors

Create List of Plotting Layers

dirichletWeights

Compute Quadrature Weights Based on Dirichlet Tessellation

dirichletVertices

Vertices and Edges of Dirichlet Tessellation

Distance Map of Line Segment Pattern

Extract the Domain of any Spatial Object

Connected Components of a Point Pattern

Corners of a rectangle

Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern

Dirichlet Tessellation of Point Pattern

Compute Minimum or Maximum Nearest-Neighbour Distance

Nearest Neighbours Between Two Patterns in Any Dimensions

Nearest neighbour distances

multiplicity.ppp

Count Multiplicity of Duplicate Points

Midpoints of Line Segment Pattern

Morphological Erosion of Windows

Extract or Replace the Plot Arguments of a Layered Object

Determine Duplicated Points in a Spatial Point Pattern

Extract Boundary Edges of a Window.

Find Line Segment Nearest to Each Point

Histogram of Values of a Spatial Function

Evaluate Expression Involving Pixel Images

Number of Points in a Point Pattern

Nearest neighbour distances in three dimensions

Compute Area of Overlap

Create a Window

Nearest Neighbour Distances in Any Dimensions

Number of Line Segments in a Line Segment Pattern

Compute Areas of Tiles in Dirichlet Tessellation

Safely Convert Point Pattern Window to Binary Mask

Cover Region with Discs

Convert Pixel Image from Numeric to Factor

Pairwise distances

Pairwise distances between line segments

Methods for Multi-Dimensional Box

Nearest Neighbours in Any Dimensions

Pad the Border of a Pixel Image

Count Number of Geometrical Objects in a Spatial Dataset

methods.distfun

Geometrical Operations for Distance Functions

Classify Points in a Point Pattern

Quadrature Scheme Based on Pixel Grid

Pairwise distances

Plot a List of Things

Histogram of Pixel Values in an Image

Spatial Covariance of a Pixel Image

Class of Images

interp.colourmap

Interpolate smoothly between specified colours

Distance Map as a Function

Diameter of an Object

Geometrical Calculations for Three-Dimensional Box

edges2triangles

List Triangles in a Graph

Interpolate a Pixel Image

Rectangular grid of points

Compute Quadrature Weights Based on Grid Counts

List Dihedral Triples in a Graph

Convert Spatial Object to Pixel Image

plot.texturemap

Plot a Texture Map

Plot a Spatial Window

Perimeter Length of Window

plot.textstring

Plot a Text String

Convert Window to Pixel Image

Create a Point Pattern

Class of Point Patterns

invoke.symbolmap

Plot Data Using Graphics Symbol Map

Create a Line Segment Pattern

Identify Segments in a Line Segment Pattern

Identify Points in a Point Pattern

Intersection of Two Tessellations

Class of Line Segment Patterns

Pairwise distances in Three Dimensions

Perform Geometric Task using a Specified Metric

pairdist.default

Pairwise distances

Test Whether an Object is a Pixel Image on a Linear Network

Test Whether An Object Is A Point Pattern on a Linear Network

Marks of a Point Pattern

methods.unitname

Methods for Units

Distance Metric

Marks of a Line Segment Pattern

Determine Whether an Object is Connected

Mean and Median of Pixel Values in an Image

Quantiles of Weighted Empirical Cumulative Distribution Function

Mean of Empirical Cumulative Distribution Function

Test whether Object is Multitype

Sample Quantiles of Pixel Image

Convert Window to Another Unit of Length

Rotate a Window

Convert Point Pattern to Another Unit of Length

Rotate or Shift Infinite Lines

run.simplepanel

Run Point-and-Click Interface

Simulate systematic random point pattern

Draw Points or Lines on a Surface Viewed in Perspective

project2segment

Move Point To Nearest Line

Extract Pixel Centres as Point Pattern

Plot a List of Things

Cut Line Segments Where They Intersect

is.multitype.ppp

Test Whether A Point Pattern is Multitype

plot.pppmatching

Plot a Point Matching

selfcrossing.psp

Crossing Points in a Line Segment Pattern

Divide Region into Quadrats

Marks of a Tessellation

Morphological Erosion by a Disc

Areas of Morphological Erosions

Make Windows Compatible

nearest.raster.point

Find Pixel Nearest to a Given Point

Summarise Marks in Every Neighbourhood in a Point Pattern

Methods for Spatial Functions

Tessellation Using Polar Coordinates

Nearest Neighbour Index Map as a Function

methods.layered

Methods for Layered Objects

Nearest neighbour distances between line segments

Nearest neighbour

Apply Scalar Dilation

List of Two-Dimensional Spatial Objects

Three Dimensional Point Pattern

K-th Nearest Point Map

Image of Nearest Defined Pixel Value

Check Whether Points Have Close Neighbours

plot a Spatial Line Segment Pattern

Mark of Nearest Neighbour

Pairwise distances

pppmatching.object

Class of Point Matchings

Apply Vector Translation

Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True

Generate N Uniform Random Points in a Rectangle

Print Brief Details of a Line Segment Pattern Dataset

Print Brief Details of a Point Pattern Dataset

Class of Quadrature Schemes

Quadrat counting for a point pattern

Empirical Intensity of Line Segment Pattern

Plot a Colour Map

plot.hyperframe

Plot Entries in a Hyperframe

Pairwise Distances in Any Dimensions

scaletointerval

Rescale Data to Lie Between Specified Limits

Find Nearest Point in a Region

Convert Line Segment Pattern to Another Unit of Length

Convert Pixel Image to Another Unit of Length

Convert dataset to another unit of length

Multidimensional Space-Time Point Pattern

summary.distfun

Summarizing a Function of Spatial Location

rescue.rectangle

Convert Window Back To Rectangle

Nearest neighbours in three dimensions

Require a Specific Version of a Package

intensity.quadratcount

Intensity Estimates Using Quadrat Counts

Reorder Levels of a Factor-Valued Image or Pattern

Apply Vector Translation To Pixel Image

Stratified random point pattern

Generate a Quadrature Scheme from a Point Pattern

Plot Image or Tessellation Using Texture Fill

Cut margins from rectangle

Plot a Graphics Symbol Map

Make Periodic Copies of a Spatial Pattern

Convert Window to Binary Mask under Constraints

Extract List of Tiles in a Tessellation

Summarizing a Pixel Image

Determine Which Tile Contains Each Given Point

Plot a Three-Dimensional Point Pattern

Perspective Plot of Pixel Image

Compute Areas of Tiles in a Tessellation

tweak.colourmap

Change Colour Values in a Colour Map

Map Duplicate Entries to Unique Entries

uniquemap.default

Map Duplicate Entries to Unique Entries

is.connected.ppp

Determine Whether a Point Pattern is Connected

Weighted kernel smoother

Weighted Histogram

Separate Multiple Columns of Marks

Text, Arrow or Scale Bar in a Diagram

Names of Tiles in a Tessellation

Test Whether An Object Is A Window

Test Whether a Window is Convex

Test Whether An Object Is A Point Pattern

Plot a Tessellation

Print a Quadrature Scheme

Place Points Evenly Along Specified Lines

Plot a Yardstick or Scale Bar

with.hyperframe

Evaluate an Expression in Each Row of a Hyperframe

Rounding of Pixel Values

Plot a Spatial Quadrature Scheme

plot.quadratcount

Plot Quadrat Counts

Print Brief Details of an Image

plot a Spatial Point Pattern

test.crossing.psp

Check Whether Segments Cross

Read Point Pattern From Data File

Quasirandom Patterns

Spatial Dimension of a Dataset

Generate a Row or Column Arrangement of Rectangles.

split.hyperframe

Divide Hyperframe Into Subsets and Reassemble

Print Brief Details of a Spatial Window

Print Progress Reports

sidelengths.owin

Side Lengths of Enclosing Rectangle of a Window

Apply Vector Translation To Line Segment Pattern

Apply Vector Translation To Box Or Point Pattern In Arbitrary Dimension

Divide Multidimensional Point Pattern into Sub-patterns

Methods for Multidimensional Space-Time Point Patterns

Lengths of Line Segments

Merge Levels of a Factor

Detect Numerical Rounding

Generate Quasirandom Point Pattern in Given Window

quadscheme.logi

Generate a Logistic Regression Quadrature Scheme from a Point Pattern

Spokes pattern of dummy points

Simple Point-and-Click Interface Panels

Quantile Tessellation

Cartesian Coordinates for a Pixel Raster

Distance Map Using Rectangular Distance Metric

Random Perturbation of a Point Pattern

Generate grid of parallel lines with random displacement

Apply Numerical Rounding to Spatial Coordinates

Summary of a Point Pattern Dataset

Rotate a Pixel Image

Approximate a Polygon by a Simpler Polygon

Set Covariance of a Window

Summary of a Line Segment Pattern Dataset

Summary of a Spatial Window

Methods for Three-Dimensional Box

Graphics Symbol Map

Union of Data and Dummy Points

Plot a Pixel Image

Tessellation Delimited by Several Sets

Print Names and Version Numbers of Libraries Loaded

Apply a Function Over a List and Obtain a List of Objects

Create a Tessellation

Vertices of a Window

Extract Unique Points from a Spatial Point Pattern

spatstat.geom-deprecated

Deprecated spatstat.geom functions

spatstat.options

Internal Options in Spatstat Package

Methods for three-dimensional point patterns

Record the Computation Time

Divide Image Into Sub-images

Add Text Labels to Spatial Pattern

Name for Unit of Length

Nearest Neighbours Between Two Patterns in 3D

Summary of a List of Things

Convert Line Segment Pattern to Pixel Image

Divide Point Pattern into Sub-patterns

transformquantiles

Transform the Quantiles

Summarizing a Quadrature Scheme

Volume of an Object

triangulate.owin

Decompose Window into Triangles

update.symbolmap

Update a Graphics Symbol Map.

Convert Pixel Array Between Different Conventions

summary.splitppp

Summary of a Split Point Pattern

Superimpose Several Geometric Patterns

Summary of a List of Spatial Objects

Unstack Each Spatial Object in a List of Objects

weighted.median

Weighted Median, Quantiles or Variance

Nearest Neighbours Between Two Patterns

Morphological Opening

Convert Point Pattern to Pixel Image

Count Number of Vertices

Plot a List of Spatial Objects

Reflect In Origin

Plot a List of Point Patterns

Apply Vector Translation To Window

Plot a List of Images

Create a Point Matching

Distance Between Two Point Patterns

Create Colour-Valued Pixel Image

Find Location of Maximum in a Pixel Image

Create A Regular Polygon

Rotate a Point Pattern

spatstat.geom-internal

Internal spatstat.geom functions

Estimate window from points alone

Rotate a Line Segment Pattern

Test Which Side of Infinite Line a Point Falls On

spatstat.geom-package

The spatstat.geom Package

subset.hyperframe

Subset of Hyperframe Satisfying A Condition

Subset of Line Segment Satisfying A Condition

Apply Vector Translation To Point Pattern

summary.anylist

Summary of a List of Things

Extract the Total Computation Time

Subset of Point Pattern Satisfying A Condition

Check For Empty Tiles in a Tessellation

Subset of Quadrature Scheme

S3 Group Generic methods for images