spatstat v1.21-3

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by Adrian Baddeley

Spatial Point Pattern analysis, model-fitting, simulation, tests

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Functions in spatstat

Name Description
BadGey Hybrid Geyer Point Process Model
Iest Estimate the I-function
Poisson Poisson Point Process Model
Ldot Multitype L-function (i-to-any)
Jest Estimate the J-function
DiggleGratton Diggle-Gratton model
Jmulti Marked J Function
Extract.quad Subset of Quadrature Scheme
Saturated Saturated Pairwise Interaction model
Kest K-function
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
LennardJones The Lennard-Jones Potential
boxx Multi-Dimensional Box
Softcore The Soft Core Point Process Model
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
StraussHard The Strauss / Hard Core Point Process Model
Extract.ppp Extract or Replace Subset of Point Pattern
Kdot Multitype K Function (i-to-any)
bind.fv Combine Function Value Tables
corners Corners of a rectangle
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
cut.im Convert Pixel Image from Numeric to Factor
Extract.msr Extract Subset of Signed or Vector Measure
Extract.fv Extract Subset of Function Values
Extract.listof Extract or Replace Subset of a List of Things
demopat Artificial Data Point Pattern
Fest Estimate the empty space function F
Replace.im Reset Values in Subset of Image
default.expand Compute Expansion Window for Simulation
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
eval.im Evaluate Expression Involving Pixel Images
is.subset.owin Determine Whether One Window is Contained In Another
Lest L-function
cells Biological Cells Point Pattern
kaplan.meier Kaplan-Meier Estimator using Histogram Data
contour.im Contour plot of pixel image
clickppp Interactively Add Points
Extract.psp Extract Subset of Line Segment Pattern
Extract.tess Extract or Replace Subset of Tessellation
Linhom L-function
lansing Lansing Woods Point Pattern
is.convex Test Whether a Window is Convex
clip.infline Intersect Infinite Straight Lines with a Window
latest.news Print News About Latest Version of Package
Fiksel The Fiksel Interaction
model.frame.ppm Extract the Environment of a Point Process Model
whist Weighted Histogram
Kcross Multitype K Function (Cross-type)
crossdist.psp Pairwise distances between two different line segment patterns
Hardcore The Hard Core Point Process Model
eem Exponential Energy Marks
Strauss The Strauss Point Process Model
MultiHard The Multitype Hard Core Point Process Model
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
methods.ppx Methods for Multidimensional Space-Time Point Patterns
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
OrdThresh Ord's Interaction model
Kest.fft K-function using FFT
heather Diggle's Heather Data
which.max.im Identify Pixelwise Maximum of Several Pixel Images
Lcross.inhom Inhomogeneous Cross Type L Function
MultiStrauss The Multitype Strauss Point Process Model
pairdist.pp3 Pairwise distances in Three Dimensions
pairdist.ppp Pairwise distances
erosion Morphological Erosion
Gmulti Marked Nearest Neighbour Distance Function
plot.envelope Plot a Simulation Envelope
plot.slrm Plot a Fitted Spatial Logistic Regression
gridweights Compute Quadrature Weights Based on Grid Counts
Lcross Multitype L-function (cross-type)
im Create a Pixel Image Object
Jcross Multitype J Function (i-to-j)
as.mask Pixel Image Approximation of a Window
matchingdist Distance for a Point Pattern Matching
quad.object Class of Quadrature Schemes
Pairwise Generic Pairwise Interaction model
areaLoss Difference of Disc Areas
Extract.splitppp Extract or Replace Sub-Patterns
logLik.ppm Log Likelihood for Poisson Point Process Model
as.owin Convert Data To Class owin
K3est K-function of a Three-Dimensional Point Pattern
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
as.matrix.im Convert Pixel Image to Matrix or Array
Hest Spherical Contact Distribution Function
multiplicity.ppp Count Multiplicity of Duplicate Points
msr Signed or Vector-Valued Measure
Jdot Multitype J Function (i-to-any)
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
rMatClust Simulate Matern Cluster Process
allstats Calculate four standard summary functions of a point pattern.
AreaInter The Area Interaction Point Process Model
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
rThomas Simulate Thomas Process
bdist.tiles Distance to Boundary of Window
area.owin Area of a Window
Gfox Foxall's Distance Functions
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
affine.owin Apply Affine Transformation To Window
Kcross.inhom Inhomogeneous Cross K Function
markcorr Mark Correlation Function
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
redwoodfull California Redwoods Point Pattern (Entire Dataset)
Emark Diagnostics for random marking
Ldot.inhom Inhomogeneous Multitype L Dot Function
pcf.ppp Pair Correlation Function of Point Pattern
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
bounding.box Bounding Box of a Window or Point Pattern
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
Ord Generic Ord Interaction model
Extract.fasp Extract Subset of Function Array
as.polygonal Convert a Window to a Polygonal Window
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
bronzefilter Bronze gradient filter data
compatible.im Test Whether Two Pixel Images Are Compatible
pixellate.ppp Convert Point Pattern to Pixel Image
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
as.rectangle Window Frame
pcfdot Multitype pair correlation function (i-to-any)
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
deltametric Delta Metric
plot.msr Plot a Signed or Vector-Valued Measure
Kscaled Locally Scaled K-function
ganglia Beta Ganglion Cells in Cat Retina, Old Version
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
summary.ppm Summarizing a Fitted Point Process Model
convexhull Convex Hull
Kmeasure Reduced Second Moment Measure
Kmulti Marked K-Function
Kdot.inhom Inhomogeneous Multitype K Dot Function
diameter Diameter of an Object
spokes Spokes pattern of dummy points
crossdist.default Pairwise distances between two different sets of points
psp.object Class of Line Segment Patterns
density.psp Kernel Smoothing of Line Segment Pattern
spatstat-deprecated Deprecated spatstat functions
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
plot.plotppm Plot a plotppm Object Created by plot.ppm
dilation Morphological Dilation
incircle Find Largest Circle Inside Window
bdist.points Distance to Boundary of Window
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
data.ppm Extract Original Data from a Fitted Point Process Model
distmap.owin Distance Map of Window
dirichlet Dirichlet Tessellation of Point Pattern
plot.psp plot a Spatial Line Segment Pattern
is.ppm Test Whether An Object Is A Fitted Point Process Model
inforder.family Infinite Order Interaction Family
Geyer Geyer's Saturation Point Process Model
progressreport Print Progress Reports
eroded.areas Areas of Morphological Erosions
diameter.box3 Geometrical Calculations for Three-Dimensional Box
project2segment Move Point To Nearest Line
ants Harkness-Isham ants' nests data
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
identify.ppp Identify Points in a Point Pattern
gridcentres Rectangular grid of points
quantile.im Sample Quantiles of Pixel Image
plot.im Plot a Pixel Image
as.box3 Convert Data to Three-Dimensional Box
discretise Safely Convert Point Pattern Window to Binary Mask
is.empty Test Whether An Object Is Empty
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
colourmap Colour Lookup Tables
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
lut Lookup Tables
with.fv Evaluate an Expression in a Function Table
cut.ppp Classify Points in a Point Pattern
append.psp Combine Two Line Segment Patterns
ripras Estimate window from points alone
by.im Apply Function to Image Broken Down by Factor
diameter.owin Diameter of a Window
is.marked Test Whether Marks Are Present
finpines Pine saplings in Finland.
trim.rectangle Cut margins from rectangle
affine Apply Affine Transformation
eval.fv Evaluate Expression Involving Functions
default.dummy Generate a Default Pattern of Dummy Points
bei Tropical rain forest trees
crossdist.ppp Pairwise distances between two different point patterns
identify.psp Identify Segments in a Line Segment Pattern
rpoispp Generate Poisson Point Pattern
model.matrix.ppm Extract Design Matrix from Point Process Model
quadratcount Quadrat counting for a point pattern
markvario Mark Variogram
hist.im Histogram of Pixel Values in an Image
rpoisline Generate Poisson Random Line Process
as.hyperframe Convert Data to Hyperframe
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
im.object Class of Images
rpoisppx Generate Poisson Point Pattern in Any Dimensions
bounding.box.xy Convex Hull of Points
density.ppp Kernel Smoothed Intensity of Point Pattern
nndist Nearest neighbour distances
simdat Simulated Point Pattern
rmh.ppm Simulate from a Fitted Point Process Model
bdist.pixels Distance to Boundary of Window
hyperframe Hyper Data Frame
vertices Vertices of a Window
harmonic Basis for Harmonic Functions
pairsat.family Saturated Pairwise Interaction Point Process Family
plot.owin Plot a Spatial Window
rNeymanScott Simulate Neyman-Scott Process
intersect.tess Intersection of Two Tessellations
superimpose Superimpose Several Point Patterns
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
as.im Convert to Pixel Image
print.quad Print a Quadrature Scheme
is.marked.ppm Test Whether A Point Process Model is Marked
box3 Three-Dimensional Box
longleaf Longleaf Pines Point Pattern
affine.psp Apply Affine Transformation To Line Segment Pattern
clickpoly Interactively Define a Polygon
applynbd Apply Function to Every Neighbourhood in a Point Pattern
owin Create a Window
raster.x Cartesian Coordinates for a Pixel Raster
smooth.ppp Spatial smoothing of observations at irregular points
interp.im Interpolate a Pixel Image
localpcf Local pair correlation function
as.ppp Convert Data To Class ppp
compatible.fv Test Whether Two Function Objects Are Compatible
crossdist Pairwise distances
intersect.owin Intersection, Union or Set Subtraction of Two Windows
fv.object Data Frames of Function Values
istat Point and Click Interface for Exploratory Analysis of Point Pattern
slrm Spatial Logistic Regression
marks Marks of a Point Pattern
angles.psp Orientation Angles of Line Segments
pixellate.owin Convert Window to Pixel Image
ord.family Ord Interaction Process Family
quadscheme Generate a Quadrature Scheme from a Point Pattern
anemones Beadlet Anemones Data
rescale.owin Convert Window to Another Unit of Length
distmap Distance Map
split.ppp Divide Point Pattern into Sub-patterns
shift.im Apply Vector Translation To Pixel Image
unique.ppp Extract Unique Points from a Spatial Point Pattern
as.tess Convert Data To Tessellation
bramblecanes Hutchings' Bramble Canes data
fitted.ppm Fitted Conditional Intensity for Point Process Model
plot.kstest Plot a Spatial Kolmogorov-Smirnov Test
betacells Beta Ganglion Cells in Cat Retina
is.owin Test Whether An Object Is A Window
perimeter Perimeter Length of Window
owin.object Class owin
areaGain Difference of Disc Areas
blur Apply Gaussian Blur to a Pixel Image
rescale Convert dataset to another unit of length
expand.owin Expand Window By Factor
chop.tess Subdivide a Window or Tessellation using a Set of Lines
update.kppm Update a Fitted Cluster Point Process Model
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
lurking Lurking variable plot
smooth.fv Apply Smoothing to Function Values
rsyst Simulate systematic random point pattern
cbind.hyperframe Combine Hyperframes by Rows or by Columns
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
pairs.im Scatterplot Matrix for Pixel Images
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
unitname Name for Unit of Length
plot.hyperframe Plot Entries in a Hyperframe
eval.fasp Evaluate Expression Involving Function Arrays
volume Volume of an Object
dirichlet.weights Compute Quadrature Weights Based on Dirichlet Tessellation
collapse.fv Collapse Several Function Tables into One
bermantest Berman's Tests for Point Process Model
as.data.frame.ppp Coerce Point Pattern to a Data Frame
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
concatxy Concatenate x,y Coordinate Vectors
print.im Print Brief Details of an Image
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
dilated.areas Areas of Morphological Dilations
infline Infinite Straight Lines
urkiola Urkiola Woods Point Pattern
affine.ppp Apply Affine Transformation To Point Pattern
humberside Humberside Data on Childhood Leukaemia and Lymphoma
pairdist.ppx Pairwise Distances in Any Dimensions
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
japanesepines Japanese Pines Point Pattern
plot.bermantest Plot Result of Berman Test
superimposePSP Superimpose Several Line Segment Patterns
plot.fasp Plot a Function Array
spatstat-internal Internal spatstat functions
kstest.ppm Kolmogorov-Smirnov Test for Point Process Model
amacrine Hughes' Amacrine Cell Data
logLik.slrm Loglikelihood of Spatial Logistic Regression
fasp.object Function Arrays for Spatial Patterns
pppmatching.object Class of Point Matchings
persp.im Perspective Plot of Pixel Image
distmap.ppp Distance Map of Point Pattern
anova.ppm ANOVA for Fitted Point Process Models
shift.psp Apply Vector Translation To Line Segment Pattern
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
coef.ppm Coefficients of Fitted Point Process Model
plot.splitppp Plot a List of Point Patterns
methods.boxx Methods for Multi-Dimensional Box
fitin.ppm Extract the Interaction from a Fitted Point Process Model
closing Morphological Closing
plot.kppm Plot a fitted cluster point process
connected Connected components of an image or window
methods.box3 Methods for Three-Dimensional Box
print.ppm Print a Fitted Point Process Model
pp3 Three Dimensional Point Pattern
distmap.psp Distance Map of Line Segment Pattern
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
lengths.psp Lengths of Line Segments
nearestsegment Find Line Segment Nearest to Each Point
quadrats Divide Region into Quadrats
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
is.multitype Test whether Object is Multitype
methods.pp3 Methods for three-dimensional point patterns
fryplot Fry Plot of Point Pattern
midpoints.psp Midpoints of Line Segment Pattern
markconnect Mark Connection Function
integral.im Integral of a Pixel Image
crossing.psp Crossing Points of Two Line Segment Patterns
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
gpc2owin Convert Polygonal Region into Different Format
plot.listof Plot a List of Things
ponderosa Ponderosa Pine Tree Point Pattern
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
border Border Region of a Window
redwood California Redwoods Point Pattern (Ripley's Subset)
ppm Fit Point Process Model to Data
endpoints.psp Endpoints of Line Segment Pattern
markcorrint Mark Correlation Integral
nnclean Nearest Neighbour Clutter Removal
nndist.psp Nearest neighbour distances between line segments
ppp Create a Point Pattern
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
rmpoint Generate N Random Multitype Points
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
compatible.fasp Test Whether Two Function Arrays Are Compatible
kppm Fit cluster point process model
nncross Nearest Neighbours Between Two Patterns
rotate.psp Rotate a Line Segment Pattern
pppdist Distance Between Two Point Patterns
centroid.owin Centroid of a window
pcf.fasp Pair Correlation Function obtained from array of K functions
rGaussPoisson Simulate Gauss-Poisson Process
miplot Morishita Index Plot
inside.owin Test Whether Points Are Inside A Window
murchison Murchison gold deposits
colourtools Convert and Compare Colours in Different Formats
clarkevans.test Clark and Evans Test
reach Interaction Distance of a Point Process
iplot Point and Click Interface for Displaying a Point Pattern
residualspaper Data and Code From JRSS Discussion Paper on Residuals
print.owin Print Brief Details of a Spatial Window
ewcdf Weighted Empirical Cumulative Distribution Function
rthin Random Thinning
runifpointx Generate N Uniform Random Points in Any Dimensions
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
opening Morphological Opening
pairdist.default Pairwise distances
rknn Theoretical Distribution of Nearest Neighbour Distance
is.ppp Test Whether An Object Is A Point Pattern
periodify Make Periodic Copies of a Spatial Pattern
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
tess Create a Tessellation
nnwhich Nearest neighbour
ppm.object Class of Fitted Point Process Models
npoints Number of Points in a Point Pattern
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
nearest.raster.point Find Pixel Nearest to a Given Point
nnwhich.pp3 Nearest neighbours in three dimensions
rhohat Smoothing Estimate of Covariate Transformation
rshift.ppp Randomly Shift a Point Pattern
nnwhich.ppx Nearest Neighbours in Any Dimensions
rpoint Generate N Random Points
plot.colourmap Plot a Colour Map
pairdist Pairwise distances
pairwise.family Pairwise Interaction Process Family
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
summary.ppp Summary of a Point Pattern Dataset
complement.owin Take Complement of a Window
plot.fv Plot Function Values
rshift Random Shift
nbfires Point Patterns of New Brunswick Forest Fires
rshift.splitppp Randomly Shift a List of Point Patterns
rlinegrid Generate grid of parallel lines with random displacement
nndist.ppx Nearest Neighbour Distances in Any Dimensions
simulate.ppm Simulate a Fitted Gibbs Point Process Model
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
pairdist.psp Pairwise distances between line segments
plot.ppm plot a Fitted Point Process Model
plot.quad plot a Spatial Quadrature Scheme
convexhull.xy Convex Hull of Points
copper Berman-Huntington points and lines data
pcfcross Multitype pair correlation function (cross-type)
pixellate.psp Convert Line Segment Pattern to Pixel Image
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
plot.pp3 Plot a three-dimensional point pattern
discpartarea Area of Part of Disc
rjitter Random Perturbation of a Point Pattern
summary.psp Summary of a Line Segment Pattern Dataset
simulate.kppm Simulate a Fitted Cluster Point Process Model
pointsOnLines Place Points Evenly Along Specified Lines
delaunay Delaunay Triangulation of Point Pattern
print.psp Print Brief Details of a Line Segment Pattern Dataset
quadrat.test Chi-Squared Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
psp Create a Line Segment Pattern
reduced.sample Reduced Sample Estimator using Histogram Data
runifdisc Generate N Uniform Random Points in a Disc
quadratresample Resample a Point Pattern by Resampling Quadrats
rMosaicSet Mosaic Random Set
rMosaicField Mosaic Random Field
stieltjes Compute Integral of Function Against Cumulative Distribution
profilepl Profile Maximum Pseudolikelihood
update.ppm Update a Fitted Point Process Model
ppp.object Class of Point Patterns
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
rescale.psp Convert Line Segment Pattern to Another Unit of Length
pixelquad Quadrature Scheme Based on Pixel Grid
predict.ppm Prediction from a Fitted Point Process Model
summary.splitppp Summary of a Split Point Pattern
predict.kppm Prediction from a Fitted Cluster Point Process Model
is.multitype.ppm Test Whether A Point Process Model is Multitype
envelope Simulation Envelopes of Summary Function
relrisk Nonparametric Estimate of Spatially-Varying Relative Risk
rMaternI Simulate Matern Model I
swedishpines Swedish Pines Point Pattern
rshift.psp Randomly Shift a Line Segment Pattern
pppmatching Create a Point Matching
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
rSSI Simulate Simple Sequential Inhibition
rcell Simulate Baddeley-Silverman Cell Process
fv Create a Function Value Table
rMaternII Simulate Matern Model II
is.marked.ppp Test Whether A Point Pattern is Marked
rStrauss Perfect Simulation of the Strauss Process
is.im Test Whether An Object Is A Pixel Image
simplify.owin Approximate a Polygon by a Simpler Polygon
rotate.owin Rotate a Window
spatstat.options Internal Options in Spatstat Package
runifpointOnLines Generate N Uniform Random Points On Line Segments
residuals.ppm Residuals for Fitted Point Process Model
summary.im Summarizing a Pixel Image
is.multitype.ppp Test Whether A Point Pattern is Multitype
spatstat-package The Spatstat Package
rpoislinetess Poisson Line Tessellation
varblock Estimate Variance of Summary Statistic by Subdivision
summary.quad Summarizing a Quadrature Scheme
rotate.ppp Rotate a Point Pattern
summary.owin Summary of a Spatial Window
shift.owin Apply Vector Translation To Window
setcov Set Covariance of a Window
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
rstrat Simulate Stratified Random Point Pattern
shapley Galaxies in the Shapley Supercluster
spruces Spruces Point Pattern
union.quad Union of Data and Dummy Points
unmark Remove Marks
square Square Window
suffstat Sufficient Statistic of Point Process Model
shift.ppp Apply Vector Translation To Point Pattern
selfcrossing.psp Crossing Points in a Line Segment Pattern
smooth.msr Smooth a Signed or Vector-Valued Measure
levelset Level Set of a Pixel Image
localK Neighbourhood density function
mincontrast Method of Minimum Contrast
thomas.estK Fit the Thomas Point Process by Minimum Contrast
letterR Window in Shape of Letter R
split.im Divide Image Into Sub-images
summary.listof Summary of a List of Things
pixellate Convert Spatial Object to Pixel Image
pcf.fv Pair Correlation Function obtained from K Function
nndist.pp3 Nearest neighbour distances in three dimensions
pcf Pair Correlation Function
plot.tess Plot a tessellation
quadrat.test.splitppp Chi-Squared Test of CSR for Split Point Pattern
rescue.rectangle Convert Window Back To Rectangle
rescale.im Convert Pixel Image to Another Unit of Length
scanpp Read Point Pattern From Data File
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
tiles Extract List of Tiles in a Tessellation
Extract.im Extract Subset of Image
Gest Nearest Neighbour Distance Function G
F3est Empty Space Function of a Three-Dimensional Point Pattern
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
Kinhom Inhomogeneous K-function
as.data.frame.im Convert Pixel Image to Data Frame
chorley Chorley-Ribble Cancer Data
as.psp Convert Data To Class psp
clarkevans Clark and Evans Aggregation Index
distfun Distance Map as a Function
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
hamster Aherne's hamster tumour data
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
methods.distfun Methods for Distance Functions
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
model.images Compute Images of Constructed Covariates
nztrees New Zealand Trees Point Pattern
pcfinhom Inhomogeneous Pair Correlation Function
disc Circular Window
plot.ppp plot a Spatial Point Pattern
print.ppp Print Brief Details of a Point Pattern Dataset
ppx Multidimensional Space-Time Point Pattern
rescale.ppp Convert Point Pattern to Another Unit of Length
rlabel Random Re-Labelling of Point Pattern
runifpoint3 Generate N Uniform Random Points in Three Dimensions
runifpoint Generate N Uniform Random Points
rotate Rotate
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
rmpoispp Generate Multitype Poisson Point Pattern
sharpen Data Sharpening of Point Pattern
tile.areas Compute Areas of Tiles in a Tessellation
shift Apply Vector Translation
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Details

Date 2011-01-17
License GPL (>= 2)
URL http://www.spatstat.org
Packaged 2011-01-17 02:46:52 UTC; adrian
Repository CRAN
Date/Publication 2011-01-17 08:12:31
depends base (>= 2.10.0) , deldir (>= 0.0-10) , graphics , mgcv , R (>= 2.10.0) , stats , utils
suggests gpclib , maptools , rpanel , scatterplot3d , sm , tkrplot
Contributors Rolf Turner, Adrian Baddeley

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