spatstat v1.22-2

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by Adrian Baddeley

Spatial Point Pattern analysis, model-fitting, simulation, tests

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Functions in spatstat

Name Description
Geyer Geyer's Saturation Point Process Model
Extract.msr Extract Subset of Signed or Vector Measure
LennardJones The Lennard-Jones Potential
Extract.listof Extract or Replace Subset of a List of Things
Hardcore The Hard Core Point Process Model
Extract.tess Extract or Replace Subset of Tessellation
Extract.ppp Extract or Replace Subset of Point Pattern
affine.psp Apply Affine Transformation To Line Segment Pattern
BadGey Hybrid Geyer Point Process Model
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
crossdist.ppp Pairwise distances between two different point patterns
Gmulti Marked Nearest Neighbour Distance Function
Kdot Multitype K Function (i-to-any)
bdist.pixels Distance to Boundary of Window
Extract.fv Extract Subset of Function Values
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
Jest Estimate the J-function
as.im Convert to Pixel Image
Kdot.inhom Inhomogeneous Multitype K Dot Function
Jcross Multitype J Function (i-to-j)
box3 Three-Dimensional Box
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
angles.psp Orientation Angles of Line Segments
StraussHard The Strauss / Hard Core Point Process Model
as.tess Convert Data To Tessellation
Kcross.inhom Inhomogeneous Cross K Function
Kest.fft K-function using FFT
Kinhom Inhomogeneous K-function
data.ppm Extract Original Data from a Fitted Point Process Model
F3est Empty Space Function of a Three-Dimensional Point Pattern
Jmulti Marked J Function
Ord Generic Ord Interaction model
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
Saturated Saturated Pairwise Interaction model
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
as.polygonal Convert a Window to a Polygonal Window
areaLoss Difference of Disc Areas
Kmulti Marked K-Function
Gfox Foxall's Distance Functions
AreaInter The Area Interaction Point Process Model
bounding.box.xy Convex Hull of Points
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
Extract.im Extract Subset of Image
as.hyperframe Convert Data to Hyperframe
as.data.frame.im Convert Pixel Image to Data Frame
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
Extract.psp Extract Subset of Line Segment Pattern
Kscaled Locally Scaled K-function
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
affine Apply Affine Transformation
demopat Artificial Data Point Pattern
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
Ldot Multitype L-function (i-to-any)
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
density.ppp Kernel Smoothed Intensity of Point Pattern
Replace.im Reset Values in Subset of Image
Emark Diagnostics for random marking
concatxy Concatenate x,y Coordinate Vectors
Lcross Multitype L-function (cross-type)
Lcross.inhom Inhomogeneous Cross Type L Function
affine.ppp Apply Affine Transformation To Point Pattern
Poisson Poisson Point Process Model
Iest Estimate the I-function
applynbd Apply Function to Every Neighbourhood in a Point Pattern
Kcross Multitype K Function (Cross-type)
bei Tropical rain forest trees
K3est K-function of a Three-Dimensional Point Pattern
append.psp Combine Two Line Segment Patterns
gpc2owin Convert Polygonal Region into Different Format
chop.tess Subdivide a Window or Tessellation using a Set of Lines
deltametric Delta Metric
bind.fv Combine Function Value Tables
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
Fest Estimate the empty space function F
Fiksel The Fiksel Interaction
Strauss The Strauss Point Process Model
Hest Spherical Contact Distribution Function
Extract.quad Subset of Quadrature Scheme
Linhom L-function
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
Kest K-function
istat Point and Click Interface for Exploratory Analysis of Point Pattern
boxx Multi-Dimensional Box
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
DiggleGratton Diggle-Gratton model
compatible.im Test Whether Two Pixel Images Are Compatible
diameter Diameter of an Object
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
Jdot Multitype J Function (i-to-any)
Kmeasure Reduced Second Moment Measure
as.matrix.im Convert Pixel Image to Matrix or Array
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
as.data.frame.ppp Coerce Point Pattern to a Data Frame
endpoints.psp Endpoints of Line Segment Pattern
dirichlet Dirichlet Tessellation of Point Pattern
Ldot.inhom Inhomogeneous Multitype L Dot Function
compatible.fv Test Whether Two Function Objects Are Compatible
discretise Safely Convert Point Pattern Window to Binary Mask
spatstat-deprecated Deprecated spatstat functions
copper Berman-Huntington points and lines data
bdist.points Distance to Boundary of Window
identify.psp Identify Segments in a Line Segment Pattern
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
identify.ppp Identify Points in a Point Pattern
clip.infline Intersect Infinite Straight Lines with a Window
fitted.ppm Fitted Conditional Intensity for Point Process Model
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
distmap.owin Distance Map of Window
diameter.owin Diameter of a Window
msr Signed or Vector-Valued Measure
ewcdf Weighted Empirical Cumulative Distribution Function
hyperframe Hyper Data Frame
anova.ppm ANOVA for Fitted Point Process Models
distmap Distance Map
intersect.tess Intersection of Two Tessellations
closing Morphological Closing
as.mask Pixel Image Approximation of a Window
MultiStrauss The Multitype Strauss Point Process Model
clickjoin Interactively join vertices on a plot
lengths.psp Lengths of Line Segments
humberside Humberside Data on Childhood Leukaemia and Lymphoma
clickppp Interactively Add Points
betacells Beta Ganglion Cells in Cat Retina
methods.kppm Methods for Cluster Point Process Models
colourtools Convert and Compare Colours in Different Formats
periodify Make Periodic Copies of a Spatial Pattern
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
circumradius Circumradius and Diameter of a Linear Network
bronzefilter Bronze gradient filter data
harmonic Basis for Harmonic Functions
plot.plotppm Plot a plotppm Object Created by plot.ppm
cut.ppp Classify Points in a Point Pattern
crossdist Pairwise distances
plot.linnet Plot a linear network
clarkevans.test Clark and Evans Test
as.rectangle Window Frame
anemones Beadlet Anemones Data
default.expand Compute Expansion Window for Simulation
bramblecanes Hutchings' Bramble Canes data
connected Connected components of an image or window
ganglia Beta Ganglion Cells in Cat Retina, Old Version
OrdThresh Ord's Interaction model
bounding.box Bounding Box of a Window or Point Pattern
delaunay Delaunay Triangulation of Point Pattern
integral.im Integral of a Pixel Image
hamster Aherne's hamster tumour data
affine.owin Apply Affine Transformation To Window
quadrat.test.splitppp Chi-Squared Test of CSR for Split Point Pattern
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
crossdist.default Pairwise distances between two different sets of points
kaplan.meier Kaplan-Meier Estimator using Histogram Data
nnwhich.ppx Nearest Neighbours in Any Dimensions
plot.ppp plot a Spatial Point Pattern
nnwhich.pp3 Nearest neighbours in three dimensions
amacrine Hughes' Amacrine Cell Data
eval.fasp Evaluate Expression Involving Function Arrays
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
fitin.ppm Extract the Interaction from a Fitted Point Process Model
distmap.psp Distance Map of Line Segment Pattern
eval.im Evaluate Expression Involving Pixel Images
nndist.pp3 Nearest neighbour distances in three dimensions
inside.owin Test Whether Points Are Inside A Window
dilated.areas Areas of Morphological Dilations
fryplot Fry Plot of Point Pattern
coef.ppm Coefficients of Fitted Point Process Model
as.owin Convert Data To Class owin
is.subset.owin Determine Whether One Window is Contained In Another
clarkevans Clark and Evans Aggregation Index
crossdist.psp Pairwise distances between two different line segment patterns
contour.im Contour plot of pixel image
heather Diggle's Heather Data
complement.owin Take Complement of a Window
gridcentres Rectangular grid of points
fasp.object Function Arrays for Spatial Patterns
as.box3 Convert Data to Three-Dimensional Box
is.marked.ppp Test Whether A Point Pattern is Marked
MultiHard The Multitype Hard Core Point Process Model
plot.kstest Plot a Spatial Kolmogorov-Smirnov Test
pppdist Distance Between Two Point Patterns
area.owin Area of a Window
is.convex Test Whether a Window is Convex
density.psp Kernel Smoothing of Line Segment Pattern
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
ppp.object Class of Point Patterns
logLik.ppm Log Likelihood and AIC for Point Process Model
clickpoly Interactively Define a Polygon
kstest.ppm Kolmogorov-Smirnov Test for Point Process Model
owin Create a Window
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
dilation Morphological Dilation
distmap.ppp Distance Map of Point Pattern
japanesepines Japanese Pines Point Pattern
methods.lpp Methods for Point Patterns on a Linear Network
rMosaicSet Mosaic Random Set
ord.family Ord Interaction Process Family
localK Neighbourhood density function
pairdist.default Pairwise distances
letterR Window in Shape of Letter R
raster.x Cartesian Coordinates for a Pixel Raster
pairwise.family Pairwise Interaction Process Family
nearestsegment Find Line Segment Nearest to Each Point
pairsat.family Saturated Pairwise Interaction Point Process Family
infline Infinite Straight Lines
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
nncross Nearest Neighbours Between Two Patterns
distfun Distance Map as a Function
reduced.sample Reduced Sample Estimator using Histogram Data
rcell Simulate Baddeley-Silverman Cell Process
pixellate.ppp Convert Point Pattern to Pixel Image
eroded.areas Areas of Morphological Erosions
nnclean Nearest Neighbour Clutter Removal
spatstat-internal Internal spatstat functions
colourmap Colour Lookup Tables
pairdist.ppx Pairwise Distances in Any Dimensions
inforder.family Infinite Order Interaction Family
eval.fv Evaluate Expression Involving Functions
pairdist.lpp Pairwise shortest-path distances between points on a linear network
im.object Class of Images
methods.ppx Methods for Multidimensional Space-Time Point Patterns
rgbim Create Colour-Valued Pixel Image
pairdist.psp Pairwise distances between line segments
rescale.ppp Convert Point Pattern to Another Unit of Length
envelope Simulation Envelopes of Summary Function
levelset Level Set of a Pixel Image
lpp Create Point Pattern on Linear Network
blur Apply Gaussian Blur to a Pixel Image
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
eem Exponential Energy Marks
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
quadscheme Generate a Quadrature Scheme from a Point Pattern
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
rotate.psp Rotate a Line Segment Pattern
methods.boxx Methods for Multi-Dimensional Box
is.im Test Whether An Object Is A Pixel Image
rshift.ppp Randomly Shift a Point Pattern
is.empty Test Whether An Object Is Empty
border Border Region of a Window
opening Morphological Opening
cbind.hyperframe Combine Hyperframes by Rows or by Columns
runifpoint Generate N Uniform Random Points
longleaf Longleaf Pines Point Pattern
pixelquad Quadrature Scheme Based on Pixel Grid
linearK Network K Function
profilepl Profile Maximum Pseudolikelihood
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
formula.ppm Model Formulae for Gibbs Point Process Models
nbfires Point Patterns of New Brunswick Forest Fires
multiplicity.ppp Count Multiplicity of Duplicate Points
rshift.splitppp Randomly Shift a List of Point Patterns
rpoisppx Generate Poisson Point Pattern in Any Dimensions
methods.pp3 Methods for three-dimensional point patterns
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
lurking Lurking variable plot
pairs.im Scatterplot Matrix for Pixel Images
is.marked Test Whether Marks Are Present
is.multitype Test whether Object is Multitype
rescale Convert dataset to another unit of length
markcorrint Mark Correlation Integral
plot.ppm plot a Fitted Point Process Model
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
midpoints.psp Midpoints of Line Segment Pattern
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
perimeter Perimeter Length of Window
pcfcross Multitype pair correlation function (cross-type)
residuals.ppm Residuals for Fitted Point Process Model
rshift Random Shift
im Create a Pixel Image Object
collapse.fv Collapse Several Function Tables into One
plot.hyperframe Plot Entries in a Hyperframe
plot.listof Plot a List of Things
compatible.fasp Test Whether Two Function Arrays Are Compatible
rhohat Smoothing Estimate of Covariate Transformation
is.ppp Test Whether An Object Is A Point Pattern
lut Lookup Tables
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
plot.slrm Plot a Fitted Spatial Logistic Regression
discpartarea Area of Part of Disc
shift.owin Apply Vector Translation To Window
fv Create a Function Value Table
unitname Name for Unit of Length
summary.psp Summary of a Line Segment Pattern Dataset
kppm Fit Cluster or Cox Point Process Model
plot.msr Plot a Signed or Vector-Valued Measure
rmpoispp Generate Multitype Poisson Point Pattern
hist.im Histogram of Pixel Values in an Image
plot.tess Plot a tessellation
rpoislpp Poisson Point Process on a Linear Network
smooth.ppp Spatial smoothing of observations at irregular points
ppx Multidimensional Space-Time Point Pattern
plot.psp plot a Spatial Line Segment Pattern
methods.distfun Methods for Distance Functions
intersect.owin Intersection, Union or Set Subtraction of Two Windows
pcfinhom Inhomogeneous Pair Correlation Function
with.fv Evaluate an Expression in a Function Table
is.ppm Test Whether An Object Is A Fitted Point Process Model
pairdist.pp3 Pairwise distances in Three Dimensions
marks Marks of a Point Pattern
is.multitype.ppp Test Whether A Point Pattern is Multitype
nnwhich Nearest neighbour
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
ppm Fit Point Process Model to Data
owin.object Class owin
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
tess Create a Tessellation
summary.ppp Summary of a Point Pattern Dataset
rotate.ppp Rotate a Point Pattern
pppmatching.object Class of Point Matchings
lansing Lansing Woods Point Pattern
runifpointx Generate N Uniform Random Points in Any Dimensions
print.ppp Print Brief Details of a Point Pattern Dataset
npoints Number of Points in a Point Pattern
pcf.fv Pair Correlation Function obtained from K Function
convexhull Convex Hull
logLik.slrm Loglikelihood of Spatial Logistic Regression
rpoint Generate N Random Points
rotate Rotate
matchingdist Distance for a Point Pattern Matching
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
pcf.fasp Pair Correlation Function obtained from array of K functions
rMosaicField Mosaic Random Field
default.dummy Generate a Default Pattern of Dummy Points
predict.kppm Prediction from a Fitted Cluster Point Process Model
quadrats Divide Region into Quadrats
rlinegrid Generate grid of parallel lines with random displacement
smooth.fv Apply Smoothing to Function Values
as.psp Convert Data To Class psp
plot.bermantest Plot Result of Berman Test
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
simulate.kppm Simulate a Fitted Cluster Point Process Model
quadratcount Quadrat counting for a point pattern
rGaussPoisson Simulate Gauss-Poisson Process
rmh.ppm Simulate from a Fitted Point Process Model
plot.quad plot a Spatial Quadrature Scheme
rmpoint Generate N Random Multitype Points
pixellate.psp Convert Line Segment Pattern to Pixel Image
setcov Set Covariance of a Window
diameter.box3 Geometrical Calculations for Three-Dimensional Box
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
nearest.raster.point Find Pixel Nearest to a Given Point
scaletointerval Rescale Data to Lie Between Specified Limits
redwood California Redwoods Point Pattern (Ripley's Subset)
model.images Compute Images of Constructed Covariates
print.quad Print a Quadrature Scheme
pairdist Pairwise distances
rstrat Simulate Stratified Random Point Pattern
murchison Murchison gold deposits
split.ppp Divide Point Pattern into Sub-patterns
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
ppp Create a Point Pattern
nsegments Number of Line Segments in a Line Segment Pattern
nndist.psp Nearest neighbour distances between line segments
rknn Theoretical Distribution of Nearest Neighbour Distance
plot.fasp Plot a Function Array
simdat Simulated Point Pattern
runifpoint3 Generate N Uniform Random Points in Three Dimensions
print.psp Print Brief Details of a Line Segment Pattern Dataset
plot.pp3 Plot a three-dimensional point pattern
unmark Remove Marks
residualspaper Data and Code From JRSS Discussion Paper on Residuals
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
summary.quad Summarizing a Quadrature Scheme
rsyst Simulate systematic random point pattern
predict.ppm Prediction from a Fitted Point Process Model
ppm.object Class of Fitted Point Process Models
rpoisline Generate Poisson Random Line Process
spruces Spruces Point Pattern
rLGCP Simulate Log-Gaussian Cox Process
persp.im Perspective Plot of Pixel Image
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
spokes Spokes pattern of dummy points
quadratresample Resample a Point Pattern by Resampling Quadrats
ripras Estimate window from points alone
suffstat Sufficient Statistic of Point Process Model
rshift.psp Randomly Shift a Line Segment Pattern
quantile.im Sample Quantiles of Pixel Image
shapley Galaxies in the Shapley Supercluster
plot.colourmap Plot a Colour Map
print.im Print Brief Details of an Image
rpoislinetess Poisson Line Tessellation
disc Circular Window
rMatClust Simulate Matern Cluster Process
superimpose Superimpose Several Geometric Patterns
rMaternII Simulate Matern Model II
rMaternI Simulate Matern Model I
runifpointOnLines Generate N Uniform Random Points On Line Segments
thomas.estK Fit the Thomas Point Process by Minimum Contrast
rSSI Simulate Simple Sequential Inhibition
project2segment Move Point To Nearest Line
urkiola Urkiola Woods Point Pattern
markconnect Mark Connection Function
expand.owin Expand Window By Factor
methods.box3 Methods for Three-Dimensional Box
runifdisc Generate N Uniform Random Points in a Disc
shift Apply Vector Translation
pairdist.ppp Pairwise distances
scanpp Read Point Pattern From Data File
rNeymanScott Simulate Neyman-Scott Process
shift.im Apply Vector Translation To Pixel Image
vertices Vertices of a Window
update.kppm Update a Fitted Cluster Point Process Model
shift.ppp Apply Vector Translation To Point Pattern
summary.ppm Summarizing a Fitted Point Process Model
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
stieltjes Compute Integral of Function Against Cumulative Distribution
quadrat.test Chi-Squared Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
shift.psp Apply Vector Translation To Line Segment Pattern
swedishpines Swedish Pines Point Pattern
volume Volume of an Object
quad.object Class of Quadrature Schemes
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
nztrees New Zealand Trees Point Pattern
rescale.im Convert Pixel Image to Another Unit of Length
plot.kppm Plot a fitted cluster point process
rpoispp Generate Poisson Point Pattern
simulate.ppm Simulate a Fitted Gibbs Point Process Model
rotate.owin Rotate a Window
pppmatching Create a Point Matching
psp Create a Line Segment Pattern
pixellate Convert Spatial Object to Pixel Image
smooth.msr Smooth a Signed or Vector-Valued Measure
sharpen Data Sharpening of Point Pattern
simplenet Simple Example of Linear Network
unique.ppp Extract Unique Points from a Spatial Point Pattern
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
varblock Estimate Variance of Summary Statistic by Subdivision
rStrauss Perfect Simulation of the Strauss Process
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
redwoodfull California Redwoods Point Pattern (Entire Dataset)
which.max.im Identify Pixelwise Maximum of Several Pixel Images
split.im Divide Image Into Sub-images
summary.splitppp Summary of a Split Point Pattern
whist Weighted Histogram
rlabel Random Re-Labelling of Point Pattern
tiles Extract List of Tiles in a Tessellation
Softcore The Soft Core Point Process Model
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
bermantest Berman's Tests for Point Process Model
corners Corners of a rectangle
dirichlet.weights Compute Quadrature Weights Based on Dirichlet Tessellation
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
fv.object Function Value Table
gridweights Compute Quadrature Weights Based on Grid Counts
incircle Find Largest Circle Inside Window
interp.im Interpolate a Pixel Image
iplot Point and Click Interface for Displaying a Point Pattern
is.owin Test Whether An Object Is A Window
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
markvario Mark Variogram
plot.envelope Plot a Simulation Envelope
psp.object Class of Line Segment Patterns
rescue.rectangle Convert Window Back To Rectangle
reach Interaction Distance of a Point Process
rjitter Random Perturbation of a Point Pattern
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
rthin Random Thinning
square Square Window
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
tile.areas Compute Areas of Tiles in a Tessellation
Extract.fasp Extract Subset of Function Array
Pairwise Generic Pairwise Interaction model
by.im Apply Function to Image Broken Down by Factor
bdist.tiles Distance to Boundary of Window
centroid.owin Centroid of a window
chorley Chorley-Ribble Cancer Data
erosion Morphological Erosion
is.multitype.ppm Test Whether A Point Process Model is Multitype
is.marked.ppm Test Whether A Point Process Model is Marked
linnet Create a Linear Network
methods.linnet Methods for Linear Networks
methods.rhohat Methods for Intensity Functions of Spatial Covariate
pcf.ppp Pair Correlation Function of Point Pattern
plot.fv Plot Function Values
plot.splitppp Plot a List of Point Patterns
pointsOnLines Place Points Evenly Along Specified Lines
ponderosa Ponderosa Pine Tree Point Pattern
progressreport Print Progress Reports
rThomas Simulate Thomas Process
trim.rectangle Cut margins from rectangle
spatstat-package The Spatstat Package
summary.owin Summary of a Spatial Window
Extract.splitppp Extract or Replace Sub-Patterns
Lest L-function
allstats Calculate four standard summary functions of a point pattern.
areaGain Difference of Disc Areas
as.function.fv Convert Function Value Table to Function
as.ppp Convert Data To Class ppp
cells Biological Cells Point Pattern
crossing.psp Crossing Points of Two Line Segment Patterns
miplot Morishita Index Plot
mincontrast Method of Minimum Contrast
nndist Nearest neighbour distances
pcf Pair Correlation Function
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
pcfdot Multitype pair correlation function (i-to-any)
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
pixellate.owin Convert Window to Pixel Image
print.owin Print Brief Details of a Spatial Window
print.ppm Print a Fitted Point Process Model
rescale.owin Convert Window to Another Unit of Length
rescale.psp Convert Line Segment Pattern to Another Unit of Length
relrisk Nonparametric Estimate of Spatially-Varying Relative Risk
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
summary.listof Summary of a List of Things
union.quad Union of Data and Dummy Points
update.ppm Update a Fitted Point Process Model
Kmodel K function of a model
localpcf Local pair correlation function
convexhull.xy Convex Hull of Points
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
finpines Pine saplings in Finland.
ants Harkness-Isham ants' nests data
pp3 Three Dimensional Point Pattern
runiflpp Uniform Random Points on a Linear Network
selfcrossing.psp Crossing Points in a Line Segment Pattern
Gest Nearest Neighbour Distance Function G
model.frame.ppm Extract the Environment of a Point Process Model
spatstat.options Internal Options in Spatstat Package
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
markcorr Mark Correlation Function
simplify.owin Approximate a Polygon by a Simpler Polygon
latest.news Print News About Latest Version of Package
cut.im Convert Pixel Image from Numeric to Factor
marks.psp Marks of a Line Segment Pattern
model.matrix.ppm Extract Design Matrix from Point Process Model
nndist.ppx Nearest Neighbour Distances in Any Dimensions
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
plot.im Plot a Pixel Image
plot.owin Plot a Spatial Window
slrm Spatial Logistic Regression
summary.im Summarizing a Pixel Image
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Details

Date 2011-06-13
License GPL (>= 2)
URL http://www.spatstat.org
Packaged 2011-06-13 09:45:14 UTC; adrian
Repository CRAN
Date/Publication 2011-06-15 18:11:32
depends base (>= 2.10.0) , deldir (>= 0.0-10) , graphics , mgcv , R (>= 2.10.0) , RandomFields (>= 2.0) , stats , utils
suggests gpclib , maptools , rpanel , scatterplot3d , sm , spatial , tkrplot
Contributors Rolf Turner, Adrian Baddeley

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