spatstat v1.23-4

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by Adrian Baddeley

Spatial Point Pattern analysis, model-fitting, simulation, tests

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Functions in spatstat

Name Description
spatstat.options Internal Options in Spatstat Package
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
with.fv Evaluate an Expression in a Function Table
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
spruces Spruces Point Pattern
summary.listof Summary of a List of Things
sumouter Compute Quadratic Forms
thomas.estK Fit the Thomas Point Process by Minimum Contrast
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
smooth.msr Smooth a Signed or Vector-Valued Measure
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
spatstat-package The Spatstat Package
varblock Estimate Variance of Summary Statistic by Subdivision
Hardcore The Hard Core Point Process Model
BadGey Hybrid Geyer Point Process Model
summary.ppp Summary of a Point Pattern Dataset
Jest Estimate the J-function
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
volume Volume of an Object
as.im Convert to Pixel Image
StraussHard The Strauss / Hard Core Point Process Model
split.ppp Divide Point Pattern into Sub-patterns
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
F3est Empty Space Function of a Three-Dimensional Point Pattern
rcell Simulate Baddeley-Silverman Cell Process
clickppp Interactively Add Points
DiggleGratton Diggle-Gratton model
as.rectangle Window Frame
Kcom Model Compensator of K Function
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
bramblecanes Hutchings' Bramble Canes data
superimpose Superimpose Several Geometric Patterns
Poisson Poisson Point Process Model
affine.ppp Apply Affine Transformation To Point Pattern
angles.psp Orientation Angles of Line Segments
summary.ppm Summarizing a Fitted Point Process Model
dilation Morphological Dilation
Kmodel K function of a model
colourtools Convert and Compare Colours in Different Formats
Emark Diagnostics for random marking
Kdot Multitype K Function (i-to-any)
Kdot.inhom Inhomogeneous Multitype K Dot Function
compatible.fv Test Whether Two Function Objects Are Compatible
chicago Chicago Street Crime Data
Lest L-function
as.matrix.im Convert Pixel Image to Matrix or Array
amacrine Hughes' Amacrine Cell Data
distmap.psp Distance Map of Line Segment Pattern
envelope.lpp Envelope for Point Patterns on Linear Network
affine Apply Affine Transformation
tiles Extract List of Tiles in a Tessellation
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
is.im Test Whether An Object Is A Pixel Image
as.function.fv Convert Function Value Table to Function
ants Harkness-Isham ants' nests data
fitted.ppm Fitted Conditional Intensity for Point Process Model
by.im Apply Function to Image Broken Down by Factor
collapse.fv Collapse Several Function Tables into One
bind.fv Combine Function Value Tables
crossdist.psp Pairwise distances between two different line segment patterns
data.ppm Extract Original Data from a Fitted Point Process Model
intersect.owin Intersection, Union or Set Subtraction of Two Windows
as.polygonal Convert a Window to a Polygonal Window
as.box3 Convert Data to Three-Dimensional Box
as.tess Convert Data To Tessellation
diameter Diameter of an Object
affine.owin Apply Affine Transformation To Window
lineardisc Compute Disc of Given Radius in Linear Network
Kscaled Locally Scaled K-function
trim.rectangle Cut margins from rectangle
centroid.owin Centroid of a window
Ldot.inhom Inhomogeneous Multitype L Dot Function
copper Berman-Huntington points and lines data
smooth.ppp Spatial smoothing of observations at irregular points
crossdist.default Pairwise distances between two different sets of points
lengths.psp Lengths of Line Segments
kstest.ppm Kolmogorov-Smirnov Test for Point Process Model
urkiola Urkiola Woods Point Pattern
Geyer Geyer's Saturation Point Process Model
eval.fasp Evaluate Expression Involving Function Arrays
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
is.ppp Test Whether An Object Is A Point Pattern
markvario Mark Variogram
spokes Spokes pattern of dummy points
Fest Estimate the empty space function F
kaplan.meier Kaplan-Meier Estimator using Histogram Data
pairwise.family Pairwise Interaction Process Family
Jdot Multitype J Function (i-to-any)
applynbd Apply Function to Every Neighbourhood in a Point Pattern
suffstat Sufficient Statistic of Point Process Model
nbfires Point Patterns of New Brunswick Forest Fires
fasp.object Function Arrays for Spatial Patterns
vertices Vertices of a Window
K3est K-function of a Three-Dimensional Point Pattern
methods.rhohat Methods for Intensity Functions of Spatial Covariate
crossdist Pairwise distances
convexhull.xy Convex Hull of Points
OrdThresh Ord's Interaction model
area.owin Area of a Window
owin Create a Window
density.ppp Kernel Smoothed Intensity of Point Pattern
pairdist.lpp Pairwise shortest-path distances between points on a linear network
spatstat-internal Internal spatstat functions
stieltjes Compute Integral of Function Against Cumulative Distribution
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
rstrat Simulate Stratified Random Point Pattern
cut.im Convert Pixel Image from Numeric to Factor
bermantest Berman's Tests for Point Process Model
inside.owin Test Whether Points Are Inside A Window
is.owin Test Whether An Object Is A Window
flipxy Exchange X and Y Coordinates
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
methods.box3 Methods for Three-Dimensional Box
infline Infinite Straight Lines
is.marked.ppm Test Whether A Point Process Model is Marked
pairs.im Scatterplot Matrix for Pixel Images
delaunay Delaunay Triangulation of Point Pattern
owin.object Class owin
identify.psp Identify Segments in a Line Segment Pattern
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
idw Inverse-distance weighted smoothing of observations at irregular points
dilated.areas Areas of Morphological Dilations
persp.im Perspective Plot of Pixel Image
chop.tess Subdivide a Window or Tessellation using a Set of Lines
runiflpp Uniform Random Points on a Linear Network
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
rhohat Smoothing Estimate of Covariate Transformation
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
zapsmall.im Rounding of Pixel Values
simulate.ppm Simulate a Fitted Gibbs Point Process Model
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
is.marked Test Whether Marks Are Present
istat Point and Click Interface for Exploratory Analysis of Point Pattern
interp.im Interpolate a Pixel Image
nndist.pp3 Nearest neighbour distances in three dimensions
bounding.box.xy Convex Hull of Points
ppm Fit Point Process Model to Data
hist.im Histogram of Pixel Values in an Image
localpcf Local pair correlation function
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
erosion Morphological Erosion
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
unique.ppp Extract Unique Points from a Spatial Point Pattern
ppp Create a Point Pattern
predict.kppm Prediction from a Fitted Cluster Point Process Model
smooth.fv Apply Smoothing to Function Values
linim Create Pixel Image on Linear Network
LennardJones The Lennard-Jones Potential
lpp Create Point Pattern on Linear Network
Kmulti Marked K-Function
nndist.ppx Nearest Neighbour Distances in Any Dimensions
methods.distfun Methods for Distance Functions
rshift.ppp Randomly Shift a Point Pattern
letterR Window in Shape of Letter R
pp3 Three Dimensional Point Pattern
plot.tess Plot a tessellation
pixellate.ppp Convert Point Pattern to Pixel Image
rMaternII Simulate Matern Model II
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
affine.psp Apply Affine Transformation To Line Segment Pattern
nearest.raster.point Find Pixel Nearest to a Given Point
nsegments Number of Line Segments in a Line Segment Pattern
levelset Level Set of a Pixel Image
plot.msr Plot a Signed or Vector-Valued Measure
rGaussPoisson Simulate Gauss-Poisson Process
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
nndist Nearest neighbour distances
predict.ppm Prediction from a Fitted Point Process Model
pcf.fasp Pair Correlation Function obtained from array of K functions
Extract.msr Extract Subset of Signed or Vector Measure
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
opening Morphological Opening
print.owin Print Brief Details of a Spatial Window
nearestsegment Find Line Segment Nearest to Each Point
project2segment Move Point To Nearest Line
as.ppp Convert Data To Class ppp
box3 Three-Dimensional Box
profilepl Profile Maximum Pseudolikelihood
midpoints.psp Midpoints of Line Segment Pattern
quadratresample Resample a Point Pattern by Resampling Quadrats
simplenet Simple Example of Linear Network
Hest Spherical Contact Distribution Function
simplify.owin Approximate a Polygon by a Simpler Polygon
runifdisc Generate N Uniform Random Points in a Disc
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
Extract.ppp Extract or Replace Subset of Point Pattern
as.hyperframe Convert Data to Hyperframe
simdat Simulated Point Pattern
as.mask Pixel Image Approximation of a Window
closing Morphological Closing
nztrees New Zealand Trees Point Pattern
pcf.fv Pair Correlation Function obtained from K Function
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
plot.layered Layered Plot
summary.quad Summarizing a Quadrature Scheme
as.data.frame.ppp Coerce Point Pattern to a Data Frame
quadrat.test.splitppp Chi-Squared Test of CSR for Split Point Pattern
Linhom L-function
plot.linnet Plot a linear network
circumradius Circumradius and Diameter of a Linear Network
fv Create a Function Value Table
plot.ppp plot a Spatial Point Pattern
colourmap Colour Lookup Tables
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
contour.im Contour plot of pixel image
plot.bermantest Plot Result of Berman Test
plot.ppm plot a Fitted Point Process Model
periodify Make Periodic Copies of a Spatial Pattern
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
scaletointerval Rescale Data to Lie Between Specified Limits
expand.owin Expand Window By Factor
bounding.box Bounding Box of a Window or Point Pattern
pppmatching.object Class of Point Matchings
clickpoly Interactively Define a Polygon
ewcdf Weighted Empirical Cumulative Distribution Function
cells Biological Cells Point Pattern
complement.owin Take Complement of a Window
plot.pp3 Plot a three-dimensional point pattern
gpc2owin Convert Polygonal Region into Different Format
kppm Fit Cluster or Cox Point Process Model
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
default.expand Compute Expansion Window for Simulation
Gres Residual G Function
rmpoint Generate N Random Multitype Points
chorley Chorley-Ribble Cancer Data
murchison Murchison gold deposits
coef.ppm Coefficients of Fitted Point Process Model
rotate.owin Rotate a Window
cbind.hyperframe Combine Hyperframes by Rows or by Columns
logLik.slrm Loglikelihood of Spatial Logistic Regression
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
clarkevans Clark and Evans Aggregation Index
is.stationary Recognise Stationary and Poisson Point Process Models
Gest Nearest Neighbour Distance Function G
Ord Generic Ord Interaction model
ripras Estimate window from points alone
unmark Remove Marks
default.dummy Generate a Default Pattern of Dummy Points
Replace.im Reset Values in Subset of Image
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
summary.owin Summary of a Spatial Window
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
concatxy Concatenate x,y Coordinate Vectors
distmap.ppp Distance Map of Point Pattern
logLik.ppm Log Likelihood and AIC for Point Process Model
discretise Safely Convert Point Pattern Window to Binary Mask
print.quad Print a Quadrature Scheme
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
is.subset.owin Determine Whether One Window is Contained In Another
spatstat-deprecated Deprecated spatstat functions
gridcentres Rectangular grid of points
rStrauss Perfect Simulation of the Strauss Process
rlabel Random Re-Labelling of Point Pattern
AreaInter The Area Interaction Point Process Model
hamster Aherne's hamster tumour data
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
plot.listof Plot a List of Things
Fiksel The Fiksel Interaction
identify.ppp Identify Points in a Point Pattern
eroded.areas Areas of Morphological Erosions
print.im Print Brief Details of an Image
linearpcf Linear Pair Correlation Function
finpines Pine saplings in Finland.
as.interact Extract Interaction Structure
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
rNeymanScott Simulate Neyman-Scott Process
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
corners Corners of a rectangle
linnet Create a Linear Network
rMatClust Simulate Matern Cluster Process
plot.psp plot a Spatial Line Segment Pattern
crossing.psp Crossing Points of Two Line Segment Patterns
disc Circular Window
markconnect Mark Connection Function
split.im Divide Image Into Sub-images
hyperframe Hyper Data Frame
bdist.points Distance to Boundary of Window
layered Create List of Plotting Layers
rpoislpp Poisson Point Process on a Linear Network
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
localK Neighbourhood density function
cut.ppp Classify Points in a Point Pattern
crossdist.ppp Pairwise distances between two different point patterns
compareFit Residual Diagnostics for Multiple Fitted Models
rescale.ppp Convert Point Pattern to Another Unit of Length
methods.linnet Methods for Linear Networks
localKinhom Inhomogeneous Neighbourhood Density Function
Extract.fasp Extract Subset of Function Array
methods.boxx Methods for Multi-Dimensional Box
rescale.owin Convert Window to Another Unit of Length
Kmeasure Reduced Second Moment Measure
rpoisline Generate Poisson Random Line Process
pairdist.pp3 Pairwise distances in Three Dimensions
methods.lppm Methods for Fitted Point Process Models on a Linear Network
heather Diggle's Heather Data
setcov Set Covariance of a Window
perimeter Perimeter Length of Window
shift.owin Apply Vector Translation To Window
Lcross.inhom Inhomogeneous Cross Type L Function
japanesepines Japanese Pines Point Pattern
Kcross.inhom Inhomogeneous Cross K Function
betacells Beta Ganglion Cells in Cat Retina
pairdist.ppp Pairwise distances
envelope Simulation Envelopes of Summary Function
anova.ppm ANOVA for Fitted Point Process Models
plot.hyperframe Plot Entries in a Hyperframe
Kcross Multitype K Function (Cross-type)
plot.kppm Plot a fitted cluster point process
pairsat.family Saturated Pairwise Interaction Point Process Family
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
distmap.owin Distance Map of Window
as.owin Convert Data To Class owin
ponderosa Ponderosa Pine Tree Point Pattern
as.data.frame.im Convert Pixel Image to Data Frame
rmh.ppm Simulate from a Fitted Point Process Model
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
progressreport Print Progress Reports
is.multitype Test whether Object is Multitype
nnclean Nearest Neighbour Clutter Removal
pairdist.ppx Pairwise Distances in Any Dimensions
rescale.psp Convert Line Segment Pattern to Another Unit of Length
multiplicity.ppp Count Multiplicity of Duplicate Points
pointsOnLines Place Points Evenly Along Specified Lines
diameter.owin Diameter of a Window
model.frame.ppm Extract the Environment of a Point Process Model
fv.object Function Value Table
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
redwood California Redwoods Point Pattern (Ripley's Subset)
model.images Compute Images of Constructed Covariates
quadrats Divide Region into Quadrats
density.psp Kernel Smoothing of Line Segment Pattern
plot.fasp Plot a Function Array
pcf.ppp Pair Correlation Function of Point Pattern
pairdist.psp Pairwise distances between line segments
methods.pp3 Methods for three-dimensional point patterns
Softcore The Soft Core Point Process Model
quadscheme Generate a Quadrature Scheme from a Point Pattern
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
Pairwise Generic Pairwise Interaction model
eem Exponential Energy Marks
harmonic Basis for Harmonic Functions
Gcom Model Compensator of Nearest Neighbour Function
pixellate.owin Convert Window to Pixel Image
Extract.tess Extract or Replace Subset of Tessellation
rshift Random Shift
quadrat.test Chi-Squared Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
miplot Morishita Index Plot
rmpoispp Generate Multitype Poisson Point Pattern
distfun Distance Map as a Function
is.ppm Test Whether An Object Is A Fitted Point Process Model
Extract.listof Extract or Replace Subset of a List of Things
residualspaper Data and Code From JRSS Discussion Paper on Residuals
formula.ppm Model Formulae for Gibbs Point Process Models
rgbim Create Colour-Valued Pixel Image
append.psp Combine Two Line Segment Patterns
marks Marks of a Point Pattern
marks.psp Marks of a Line Segment Pattern
Saturated Saturated Pairwise Interaction model
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
rThomas Simulate Thomas Process
clickjoin Interactively join vertices on a plot
print.ppm Print a Fitted Point Process Model
shift.ppp Apply Vector Translation To Point Pattern
methods.lpp Methods for Point Patterns on a Linear Network
mincontrast Method of Minimum Contrast
as.psp Convert Data To Class psp
Kest.fft K-function using FFT
nndist.psp Nearest neighbour distances between line segments
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
is.multitype.ppp Test Whether A Point Pattern is Multitype
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
predict.lppm Predict Point Process Model on Linear Network
compatible.im Test Whether Two Pixel Images Are Compatible
clip.infline Intersect Infinite Straight Lines with a Window
psp.object Class of Line Segment Patterns
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
sharpen Data Sharpening of Point Pattern
Kest K-function
convexhull Convex Hull
lut Lookup Tables
flu Influenza Virus Proteins
npoints Number of Points in a Point Pattern
methods.ppx Methods for Multidimensional Space-Time Point Patterns
pppdist Distance Between Two Point Patterns
fitin.ppm Extract the Interaction from a Fitted Point Process Model
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
pcfcross Multitype pair correlation function (cross-type)
bronzefilter Bronze gradient filter data
demopat Artificial Data Point Pattern
intersect.tess Intersection of Two Tessellations
distmap Distance Map
pixellate Convert Spatial Object to Pixel Image
ppm.object Class of Fitted Point Process Models
endpoints.psp Endpoints of Line Segment Pattern
redwoodfull California Redwoods Point Pattern (Entire Dataset)
pairdist.default Pairwise distances
inforder.family Infinite Order Interaction Family
relrisk Nonparametric Estimate of Spatially-Varying Relative Risk
rsyst Simulate systematic random point pattern
plot.owin Plot a Spatial Window
print.psp Print Brief Details of a Line Segment Pattern Dataset
ord.family Ord Interaction Process Family
is.marked.ppp Test Whether A Point Pattern is Marked
matchingdist Distance for a Point Pattern Matching
reach Interaction Distance of a Point Process
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
pcfinhom Inhomogeneous Pair Correlation Function
rSSI Simulate Simple Sequential Inhibition
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
ppx Multidimensional Space-Time Point Pattern
plot.envelope Plot a Simulation Envelope
humberside Humberside Data on Childhood Leukaemia and Lymphoma
pcfdot Multitype pair correlation function (i-to-any)
incircle Find Largest Circle Inside Window
lppm Fit Point Process Model to Point Pattern on Linear Network
runifpointx Generate N Uniform Random Points in Any Dimensions
nnwhich.pp3 Nearest neighbours in three dimensions
nncross Nearest Neighbours Between Two Patterns
tile.areas Compute Areas of Tiles in a Tessellation
latest.news Print News About Latest Version of Package
summary.splitppp Summary of a Split Point Pattern
integral.im Integral of a Pixel Image
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
slrm Spatial Logistic Regression
print.ppp Print Brief Details of a Point Pattern Dataset
shift Apply Vector Translation
rpoispp Generate Poisson Point Pattern
residuals.ppm Residuals for Fitted Point Process Model
is.convex Test Whether a Window is Convex
runifpoint Generate N Uniform Random Points
npfun Dummy Function Returns Number of Points
runifpoint3 Generate N Uniform Random Points in Three Dimensions
nnwhich Nearest neighbour
update.ppm Update a Fitted Point Process Model
selfcrossing.psp Crossing Points in a Line Segment Pattern
scanpp Read Point Pattern From Data File
markcorrint Mark Correlation Integral
methods.kppm Methods for Cluster Point Process Models
which.max.im Identify Pixelwise Maximum of Several Pixel Images
ppp.object Class of Point Patterns
plot.quad plot a Spatial Quadrature Scheme
rLGCP Simulate Log-Gaussian Cox Process
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
quad.object Class of Quadrature Schemes
psp Create a Line Segment Pattern
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
tess Create a Tessellation
rjitter Random Perturbation of a Point Pattern
rescue.rectangle Convert Window Back To Rectangle
reduced.sample Reduced Sample Estimator using Histogram Data
update.kppm Update a Fitted Cluster Point Process Model
rotate.ppp Rotate a Point Pattern
rpoislinetess Poisson Line Tessellation
is.empty Test Whether An Object Is Empty
summary.im Summarizing a Pixel Image
union.quad Union of Data and Dummy Points
Extract.im Extract Subset of Image
Iest Estimate the I-function
Kinhom Inhomogeneous K-function
Extract.psp Extract Subset of Line Segment Pattern
Kres Residual K Function
Extract.quad Subset of Quadrature Scheme
Lcross Multitype L-function (cross-type)
allstats Calculate four standard summary functions of a point pattern.
Extract.fv Extract Subset of Function Values
bdist.pixels Distance to Boundary of Window
Jcross Multitype J Function (i-to-j)
bei Tropical rain forest trees
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
bdist.tiles Distance to Boundary of Window
Ldot Multitype L-function (i-to-any)
border Border Region of a Window
swedishpines Swedish Pines Point Pattern
connected Connected components of an image or window
deltametric Delta Metric
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
areaLoss Difference of Disc Areas
eval.fv Evaluate Expression Involving Functions
areaGain Difference of Disc Areas
diameter.box3 Geometrical Calculations for Three-Dimensional Box
iplot Point and Click Interface for Displaying a Point Pattern
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
plot.slrm Plot a Fitted Spatial Logistic Regression
ganglia Beta Ganglion Cells in Cat Retina, Old Version
im.object Class of Images
eval.im Evaluate Expression Involving Pixel Images
is.multitype.ppm Test Whether A Point Process Model is Multitype
plot.fv Plot Function Values
im Create a Pixel Image Object
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
rescale.im Convert Pixel Image to Another Unit of Length
rMosaicSet Mosaic Random Set
lurking Lurking variable plot
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
linearK Linear K Function
rpoint Generate N Random Points
longleaf Longleaf Pines Point Pattern
whist Weighted Histogram
pixellate.psp Convert Line Segment Pattern to Pixel Image
plot.splitppp Plot a List of Point Patterns
rshift.psp Randomly Shift a Line Segment Pattern
raster.x Cartesian Coordinates for a Pixel Raster
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
plot.im Plot a Pixel Image
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
pairdist Pairwise distances
summary.psp Summary of a Line Segment Pattern Dataset
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
rthin Random Thinning
plot.linim Plot Pixel Image on Linear Network
rotate Rotate
runifpointOnLines Generate N Uniform Random Points On Line Segments
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
rpoisppx Generate Poisson Point Pattern in Any Dimensions
Extract.splitppp Extract or Replace Sub-Patterns
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
Gfox Foxall's Distance Functions
anemones Beadlet Anemones Data
MultiStrauss The Multitype Strauss Point Process Model
clarkevans.test Clark and Evans Test
compatible.fasp Test Whether Two Function Arrays Are Compatible
linearKinhom Inhomogeneous Linear K Function
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
fryplot Fry Plot of Point Pattern
msr Signed or Vector-Valued Measure
markcorr Mark Correlation Function
pppmatching Create a Point Matching
plot.kstest Plot a Spatial Kolmogorov-Smirnov Test
pcf Pair Correlation Function
rlinegrid Generate grid of parallel lines with random displacement
rMaternI Simulate Matern Model I
shift.im Apply Vector Translation To Pixel Image
rotate.psp Rotate a Line Segment Pattern
unitname Name for Unit of Length
square Square Window
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
Strauss The Strauss Point Process Model
Jmulti Marked J Function
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
MultiHard The Multitype Hard Core Point Process Model
Gmulti Marked Nearest Neighbour Distance Function
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
blur Apply Gaussian Blur to a Pixel Image
dirichlet.weights Compute Quadrature Weights Based on Dirichlet Tessellation
gridweights Compute Quadrature Weights Based on Grid Counts
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
boxx Multi-Dimensional Box
dirichlet Dirichlet Tessellation of Point Pattern
discpartarea Area of Part of Disc
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
lansing Lansing Woods Point Pattern
model.depends Identify Covariates Involved in each Model Term
model.matrix.ppm Extract Design Matrix from Point Process Model
plot.plotppm Plot a plotppm Object Created by plot.ppm
plot.colourmap Plot a Colour Map
nnwhich.ppx Nearest Neighbours in Any Dimensions
quantile.im Sample Quantiles of Pixel Image
pixelquad Quadrature Scheme Based on Pixel Grid
quadratcount Quadrat counting for a point pattern
rMosaicField Mosaic Random Field
rshift.splitppp Randomly Shift a List of Point Patterns
rescale Convert dataset to another unit of length
rknn Theoretical Distribution of Nearest Neighbour Distance
shapley Galaxies in the Shapley Supercluster
shift.psp Apply Vector Translation To Line Segment Pattern
simulate.kppm Simulate a Fitted Cluster Point Process Model
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Details

Date 2011-09-09
License GPL (>= 2)
URL http://www.spatstat.org
Packaged 2011-09-09 08:41:01 UTC; adrian
Repository CRAN
Date/Publication 2011-09-09 13:09:10
depends base (>= 2.13.0) , deldir (>= 0.0-10) , graphics , mgcv , R (>= 2.13.0) , stats , utils
suggests gpclib , maptools , RandomFields (>= 2.0) , rpanel , scatterplot3d , sm , spatial , tkrplot
Contributors Rolf Turner, Adrian Baddeley

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