spatstat v1.23-5

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by Adrian Baddeley

Spatial Point Pattern analysis, model-fitting, simulation, tests

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Functions in spatstat

Name Description
affine.owin Apply Affine Transformation To Window
Jcross Multitype J Function (i-to-j)
Iest Estimate the I-function
Saturated Saturated Pairwise Interaction model
Kmulti Marked K-Function
Gmulti Marked Nearest Neighbour Distance Function
affine Apply Affine Transformation
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
bdist.pixels Distance to Boundary of Window
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
as.data.frame.ppp Coerce Point Pattern to a Data Frame
Replace.im Reset Values in Subset of Image
methods.box3 Methods for Three-Dimensional Box
Gest Nearest Neighbour Distance Function G
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
Extract.splitppp Extract or Replace Sub-Patterns
crossdist.ppp Pairwise distances between two different point patterns
bounding.box.xy Convex Hull of Points
is.multitype Test whether Object is Multitype
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
chorley Chorley-Ribble Cancer Data
betacells Beta Ganglion Cells in Cat Retina
finpines Pine saplings in Finland.
flu Influenza Virus Proteins
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
identify.psp Identify Segments in a Line Segment Pattern
crossdist.default Pairwise distances between two different sets of points
bind.fv Combine Function Value Tables
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
flipxy Exchange X and Y Coordinates
Softcore The Soft Core Point Process Model
Lcross Multitype L-function (cross-type)
allstats Calculate four standard summary functions of a point pattern.
fv.object Function Value Table
by.im Apply Function to Image Broken Down by Factor
pairdist.default Pairwise distances
demopat Artificial Data Point Pattern
intersect.tess Intersection of Two Tessellations
Lest L-function
lineardisc Compute Disc of Given Radius in Linear Network
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
Lcross.inhom Inhomogeneous Cross Type L Function
collapse.fv Collapse Several Function Tables into One
eem Exponential Energy Marks
kstest.ppm Kolmogorov-Smirnov Test for Point Process Model
endpoints.psp Endpoints of Line Segment Pattern
linearpcf Linear Pair Correlation Function
idw Inverse-distance weighted smoothing of observations at irregular points
convexhull.xy Convex Hull of Points
bronzefilter Bronze gradient filter data
npoints Number of Points in a Point Pattern
dilated.areas Areas of Morphological Dilations
Kcross.inhom Inhomogeneous Cross K Function
lpp Create Point Pattern on Linear Network
bounding.box Bounding Box of a Window or Point Pattern
crossdist Pairwise distances
eval.im Evaluate Expression Involving Pixel Images
anova.ppm ANOVA for Fitted Point Process Models
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
logLik.slrm Loglikelihood of Spatial Logistic Regression
as.mask Pixel Image Approximation of a Window
Ldot.inhom Inhomogeneous Multitype L Dot Function
closing Morphological Closing
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
dilation Morphological Dilation
model.depends Identify Covariates Involved in each Model Term
nnwhich.pp3 Nearest neighbours in three dimensions
nearest.raster.point Find Pixel Nearest to a Given Point
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
integral.im Integral of a Pixel Image
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
bdist.points Distance to Boundary of Window
kaplan.meier Kaplan-Meier Estimator using Histogram Data
box3 Three-Dimensional Box
markconnect Mark Connection Function
psp Create a Line Segment Pattern
OrdThresh Ord's Interaction model
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
blur Apply Gaussian Blur to a Pixel Image
diameter.owin Diameter of a Window
lansing Lansing Woods Point Pattern
plot.colourmap Plot a Colour Map
markvario Mark Variogram
bermantest Berman's Tests for Point Process Model
quadrats Divide Region into Quadrats
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
Strauss The Strauss Point Process Model
npfun Dummy Function Returns Number of Points
methods.kppm Methods for Cluster Point Process Models
pairwise.family Pairwise Interaction Process Family
as.box3 Convert Data to Three-Dimensional Box
MultiStrauss The Multitype Strauss Point Process Model
methods.distfun Methods for Distance Functions
Gres Residual G Function
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
kppm Fit Cluster or Cox Point Process Model
as.data.frame.im Convert Pixel Image to Data Frame
humberside Humberside Data on Childhood Leukaemia and Lymphoma
Kest.fft K-function using FFT
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
Fest Estimate the empty space function F
nztrees New Zealand Trees Point Pattern
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
clickppp Interactively Add Points
fitin.ppm Extract the Interaction from a Fitted Point Process Model
lut Lookup Tables
eroded.areas Areas of Morphological Erosions
inforder.family Infinite Order Interaction Family
compatible.fv Test Whether Two Function Objects Are Compatible
pppmatching Create a Point Matching
hamster Aherne's hamster tumour data
multiplicity.ppp Count Multiplicity of Duplicate Points
nndist.ppx Nearest Neighbour Distances in Any Dimensions
append.psp Combine Two Line Segment Patterns
rshift Random Shift
fitted.ppm Fitted Conditional Intensity for Point Process Model
nearestsegment Find Line Segment Nearest to Each Point
convexhull Convex Hull
distmap.owin Distance Map of Window
Kcross Multitype K Function (Cross-type)
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
envelope Simulation Envelopes of Summary Function
rshift.ppp Randomly Shift a Point Pattern
contour.im Contour plot of pixel image
clip.infline Intersect Infinite Straight Lines with a Window
is.stationary Recognise Stationary and Poisson Point Process Models
compareFit Residual Diagnostics for Multiple Fitted Models
pcf.fv Pair Correlation Function obtained from K Function
Extract.psp Extract Subset of Line Segment Pattern
nsegments Number of Line Segments in a Line Segment Pattern
Gcom Model Compensator of Nearest Neighbour Function
as.rectangle Window Frame
quadrat.test Chi-Squared Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
pcf.ppp Pair Correlation Function of Point Pattern
plot.splitppp Plot a List of Point Patterns
japanesepines Japanese Pines Point Pattern
eval.fasp Evaluate Expression Involving Function Arrays
latest.news Print News About Latest Version of Package
owin.object Class owin
levelset Level Set of a Pixel Image
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
data.ppm Extract Original Data from a Fitted Point Process Model
colourtools Convert and Compare Colours in Different Formats
methods.pp3 Methods for three-dimensional point patterns
rjitter Random Perturbation of a Point Pattern
pairsat.family Saturated Pairwise Interaction Point Process Family
pcf.fasp Pair Correlation Function obtained from array of K functions
model.images Compute Images of Constructed Covariates
Kmodel K function of a model
istat Point and Click Interface for Exploratory Analysis of Point Pattern
plot.owin Plot a Spatial Window
interp.im Interpolate a Pixel Image
hyperframe Hyper Data Frame
border Border Region of a Window
copper Berman-Huntington points and lines data
StraussHard The Strauss / Hard Core Point Process Model
clickjoin Interactively join vertices on a plot
rMosaicSet Mosaic Random Set
Kcom Model Compensator of K Function
plot.slrm Plot a Fitted Spatial Logistic Regression
pointsOnLines Place Points Evenly Along Specified Lines
as.tess Convert Data To Tessellation
anemones Beadlet Anemones Data
linearKinhom Inhomogeneous Linear K Function
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
rescale Convert dataset to another unit of length
nnwhich.ppx Nearest Neighbours in Any Dimensions
letterR Window in Shape of Letter R
intersect.owin Intersection, Union or Set Subtraction of Two Windows
rpoislinetess Poisson Line Tessellation
quadratcount Quadrat counting for a point pattern
relrisk Nonparametric Estimate of Spatially-Varying Relative Risk
rknn Theoretical Distribution of Nearest Neighbour Distance
rshift.splitppp Randomly Shift a List of Point Patterns
applynbd Apply Function to Every Neighbourhood in a Point Pattern
is.marked Test Whether Marks Are Present
profilepl Profile Maximum Pseudolikelihood
bei Tropical rain forest trees
disc Circular Window
Extract.im Extract Subset of Image
cells Biological Cells Point Pattern
F3est Empty Space Function of a Three-Dimensional Point Pattern
pppmatching.object Class of Point Matchings
pairdist Pairwise distances
plot.envelope Plot a Simulation Envelope
rpoislpp Poisson Point Process on a Linear Network
redwood California Redwoods Point Pattern (Ripley's Subset)
print.quad Print a Quadrature Scheme
rGaussPoisson Simulate Gauss-Poisson Process
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
crossdist.psp Pairwise distances between two different line segment patterns
rotate.owin Rotate a Window
rshift.psp Randomly Shift a Line Segment Pattern
cbind.hyperframe Combine Hyperframes by Rows or by Columns
quadratresample Resample a Point Pattern by Resampling Quadrats
psp.object Class of Line Segment Patterns
rgbim Create Colour-Valued Pixel Image
iplot Point and Click Interface for Displaying a Point Pattern
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
Kmeasure Reduced Second Moment Measure
discpartarea Area of Part of Disc
ganglia Beta Ganglion Cells in Cat Retina, Old Version
cut.ppp Classify Points in a Point Pattern
Pairwise Generic Pairwise Interaction model
compatible.fasp Test Whether Two Function Arrays Are Compatible
Extract.fasp Extract Subset of Function Array
BadGey Hybrid Geyer Point Process Model
quadrat.test.splitppp Chi-Squared Test of CSR for Split Point Pattern
pixellate.owin Convert Window to Pixel Image
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
plot.fv Plot Function Values
compatible.im Test Whether Two Pixel Images Are Compatible
as.hyperframe Convert Data to Hyperframe
rstrat Simulate Stratified Random Point Pattern
shift.owin Apply Vector Translation To Window
ppm.object Class of Fitted Point Process Models
simulate.ppm Simulate a Fitted Gibbs Point Process Model
rescale.ppp Convert Point Pattern to Another Unit of Length
linim Create Pixel Image on Linear Network
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
scanpp Read Point Pattern From Data File
rlabel Random Re-Labelling of Point Pattern
linnet Create a Linear Network
Poisson Poisson Point Process Model
identify.ppp Identify Points in a Point Pattern
whist Weighted Histogram
shift.ppp Apply Vector Translation To Point Pattern
msr Signed or Vector-Valued Measure
MultiHard The Multitype Hard Core Point Process Model
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
scaletointerval Rescale Data to Lie Between Specified Limits
is.multitype.ppp Test Whether A Point Pattern is Multitype
smooth.msr Smooth a Signed or Vector-Valued Measure
update.kppm Update a Fitted Cluster Point Process Model
sharpen Data Sharpening of Point Pattern
unique.ppp Extract Unique Points from a Spatial Point Pattern
Jmulti Marked J Function
spatstat-internal Internal spatstat functions
bramblecanes Hutchings' Bramble Canes data
Kest K-function
shift.psp Apply Vector Translation To Line Segment Pattern
model.frame.ppm Extract the Environment of a Point Process Model
mincontrast Method of Minimum Contrast
model.matrix.ppm Extract Design Matrix from Point Process Model
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
nnwhich Nearest neighbour
linearK Linear K Function
urkiola Urkiola Woods Point Pattern
runifpoint3 Generate N Uniform Random Points in Three Dimensions
nndist Nearest neighbour distances
layered Create List of Plotting Layers
pairdist.lpp Pairwise shortest-path distances between points on a linear network
complement.owin Take Complement of a Window
dirichlet Dirichlet Tessellation of Point Pattern
pixellate.psp Convert Line Segment Pattern to Pixel Image
smooth.ppp Spatial smoothing of observations at irregular points
matchingdist Distance for a Point Pattern Matching
miplot Morishita Index Plot
pcfdot Multitype pair correlation function (i-to-any)
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
update.ppm Update a Fitted Point Process Model
ppm Fit Point Process Model to Data
predict.lppm Predict Point Process Model on Linear Network
spokes Spokes pattern of dummy points
predict.ppm Prediction from a Fitted Point Process Model
predict.kppm Prediction from a Fitted Cluster Point Process Model
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
is.marked.ppp Test Whether A Point Pattern is Marked
pairdist.ppx Pairwise Distances in Any Dimensions
is.convex Test Whether a Window is Convex
suffstat Sufficient Statistic of Point Process Model
methods.ppx Methods for Multidimensional Space-Time Point Patterns
lengths.psp Lengths of Line Segments
persp.im Perspective Plot of Pixel Image
zapsmall.im Rounding of Pixel Values
nndist.psp Nearest neighbour distances between line segments
areaGain Difference of Disc Areas
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
summary.ppp Summary of a Point Pattern Dataset
plot.fasp Plot a Function Array
pool Pool Data
methods.boxx Methods for Multi-Dimensional Box
as.ppp Convert Data To Class ppp
boxx Multi-Dimensional Box
amacrine Hughes' Amacrine Cell Data
DiggleGratton Diggle-Gratton model
longleaf Longleaf Pines Point Pattern
plot.ppm plot a Fitted Point Process Model
methods.rhohat Methods for Intensity Functions of Spatial Covariate
distfun Distance Map as a Function
Fiksel The Fiksel Interaction
Gfox Foxall's Distance Functions
as.psp Convert Data To Class psp
circumradius Circumradius and Diameter of a Linear Network
gridweights Compute Quadrature Weights Based on Grid Counts
plot.bermantest Plot Result of Berman Test
Jdot Multitype J Function (i-to-any)
hist.im Histogram of Pixel Values in an Image
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
rMatClust Simulate Matern Cluster Process
K3est K-function of a Three-Dimensional Point Pattern
methods.lpp Methods for Point Patterns on a Linear Network
project2segment Move Point To Nearest Line
progressreport Print Progress Reports
pixelquad Quadrature Scheme Based on Pixel Grid
ppp Create a Point Pattern
rescale.im Convert Pixel Image to Another Unit of Length
plot.psp plot a Spatial Line Segment Pattern
rescue.rectangle Convert Window Back To Rectangle
residualspaper Data and Code From JRSS Discussion Paper on Residuals
rlinegrid Generate grid of parallel lines with random displacement
Geyer Geyer's Saturation Point Process Model
fryplot Fry Plot of Point Pattern
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
Extract.tess Extract or Replace Subset of Tessellation
bdist.tiles Distance to Boundary of Window
distmap.ppp Distance Map of Point Pattern
plot.listof Plot a List of Things
envelope.envelope Recompute Envelopes
Ldot Multitype L-function (i-to-any)
runiflpp Uniform Random Points on a Linear Network
print.psp Print Brief Details of a Line Segment Pattern Dataset
chicago Chicago Street Crime Data
rStrauss Perfect Simulation of the Strauss Process
plot.tess Plot a tessellation
cut.im Convert Pixel Image from Numeric to Factor
as.polygonal Convert a Window to a Polygonal Window
pcfinhom Inhomogeneous Pair Correlation Function
area.owin Area of a Window
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
inside.owin Test Whether Points Are Inside A Window
plot.ppp plot a Spatial Point Pattern
owin Create a Window
Jest Estimate the J-function
plot.pp3 Plot a three-dimensional point pattern
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
rotate.psp Rotate a Line Segment Pattern
rNeymanScott Simulate Neyman-Scott Process
ppp.object Class of Point Patterns
marks.psp Marks of a Line Segment Pattern
plot.plotppm Plot a plotppm Object Created by plot.ppm
rThomas Simulate Thomas Process
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
rotate Rotate
union.quad Union of Data and Dummy Points
nnclean Nearest Neighbour Clutter Removal
residuals.ppm Residuals for Fitted Point Process Model
rhohat Smoothing Estimate of Covariate Transformation
summary.owin Summary of a Spatial Window
rpoispp Generate Poisson Point Pattern
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
angles.psp Orientation Angles of Line Segments
infline Infinite Straight Lines
simplify.owin Approximate a Polygon by a Simpler Polygon
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
unitname Name for Unit of Length
erosion Morphological Erosion
rmpoint Generate N Random Multitype Points
Kscaled Locally Scaled K-function
runifpointx Generate N Uniform Random Points in Any Dimensions
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
LennardJones The Lennard-Jones Potential
density.psp Kernel Smoothing of Line Segment Pattern
raster.x Cartesian Coordinates for a Pixel Raster
Extract.quad Subset of Quadrature Scheme
split.ppp Divide Point Pattern into Sub-patterns
Extract.fv Extract Subset of Function Values
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
pcf Pair Correlation Function
ants Harkness-Isham ants' nests data
shapley Galaxies in the Shapley Supercluster
spatstat-deprecated Deprecated spatstat functions
plot.quad plot a Spatial Quadrature Scheme
smooth.fv Apply Smoothing to Function Values
rSSI Simulate Simple Sequential Inhibition
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
is.marked.ppm Test Whether A Point Process Model is Marked
localpcf Local pair correlation function
rsyst Simulate systematic random point pattern
unmark Remove Marks
trim.rectangle Cut margins from rectangle
as.im Convert to Pixel Image
tiles Extract List of Tiles in a Tessellation
ripras Estimate window from points alone
pool.envelope Pool Data from Several Envelopes
ponderosa Ponderosa Pine Tree Point Pattern
pairdist.psp Pairwise distances between line segments
runifdisc Generate N Uniform Random Points in a Disc
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
centroid.owin Centroid of a window
rthin Random Thinning
delaunay Delaunay Triangulation of Point Pattern
vertices Vertices of a Window
which.max.im Identify Pixelwise Maximum of Several Pixel Images
split.im Divide Image Into Sub-images
plot.hyperframe Plot Entries in a Hyperframe
tile.areas Compute Areas of Tiles in a Tessellation
envelope.lpp Envelope for Point Patterns on Linear Network
affine.ppp Apply Affine Transformation To Point Pattern
pairdist.pp3 Pairwise distances in Three Dimensions
simulate.kppm Simulate a Fitted Cluster Point Process Model
nncross Nearest Neighbours Between Two Patterns
spatstat.options Internal Options in Spatstat Package
areaLoss Difference of Disc Areas
eval.fv Evaluate Expression Involving Functions
midpoints.psp Midpoints of Line Segment Pattern
is.subset.owin Determine Whether One Window is Contained In Another
logLik.ppm Log Likelihood and AIC for Point Process Model
localK Neighbourhood density function
shift Apply Vector Translation
im.object Class of Images
markcorrint Mark Correlation Integral
summary.listof Summary of a List of Things
distmap.psp Distance Map of Line Segment Pattern
Hardcore The Hard Core Point Process Model
square Square Window
gridcentres Rectangular grid of points
varblock Estimate Variance of Summary Statistic by Subdivision
pcfcross Multitype pair correlation function (cross-type)
clickpoly Interactively Define a Polygon
superimpose Superimpose Several Geometric Patterns
chop.tess Subdivide a Window or Tessellation using a Set of Lines
nbfires Point Patterns of New Brunswick Forest Fires
volume Volume of an Object
sumouter Compute Quadratic Forms
corners Corners of a rectangle
plot.linim Plot Pixel Image on Linear Network
fasp.object Function Arrays for Spatial Patterns
pool.fasp Pool Data from Several Function Arrays
plot.im Plot a Pixel Image
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
with.fv Evaluate an Expression in a Function Table
ppx Multidimensional Space-Time Point Pattern
print.im Print Brief Details of an Image
is.multitype.ppm Test Whether A Point Process Model is Multitype
plot.layered Layered Plot
periodify Make Periodic Copies of a Spatial Pattern
plot.kstest Plot a Spatial Kolmogorov-Smirnov Test
rMaternI Simulate Matern Model I
rpoisppx Generate Poisson Point Pattern in Any Dimensions
as.interact Extract Interaction Structure
rLGCP Simulate Log-Gaussian Cox Process
distmap Distance Map
rpoisline Generate Poisson Random Line Process
markcorr Mark Correlation Function
summary.im Summarizing a Pixel Image
reach Interaction Distance of a Point Process
print.ppp Print Brief Details of a Point Pattern Dataset
summary.ppm Summarizing a Fitted Point Process Model
spatstat-package The Spatstat Package
connected Connected components of an image or window
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
rmh.ppm Simulate from a Fitted Point Process Model
rmpoispp Generate Multitype Poisson Point Pattern
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
Extract.ppp Extract or Replace Subset of Point Pattern
print.owin Print Brief Details of a Spatial Window
quad.object Class of Quadrature Schemes
rpoint Generate N Random Points
runifpoint Generate N Uniform Random Points
spruces Spruces Point Pattern
plot.msr Plot a Signed or Vector-Valued Measure
rotate.ppp Rotate a Point Pattern
selfcrossing.psp Crossing Points in a Line Segment Pattern
tess Create a Tessellation
AreaInter The Area Interaction Point Process Model
summary.psp Summary of a Line Segment Pattern Dataset
affine.psp Apply Affine Transformation To Line Segment Pattern
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
colourmap Colour Lookup Tables
crossing.psp Crossing Points of Two Line Segment Patterns
incircle Find Largest Circle Inside Window
density.ppp Kernel Smoothed Intensity of Point Pattern
Linhom L-function
im Create a Pixel Image Object
heather Diggle's Heather Data
Extract.msr Extract Subset of Signed or Vector Measure
Kdot Multitype K Function (i-to-any)
deltametric Delta Metric
is.ppm Test Whether An Object Is A Fitted Point Process Model
lurking Lurking variable plot
expand.owin Expand Window By Factor
diameter.box3 Geometrical Calculations for Three-Dimensional Box
Emark Diagnostics for random marking
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
default.expand Compute Expansion Window for Simulation
murchison Murchison gold deposits
harmonic Basis for Harmonic Functions
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
pairs.im Scatterplot Matrix for Pixel Images
clarkevans Clark and Evans Aggregation Index
fv Create a Function Value Table
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
opening Morphological Opening
lppm Fit Point Process Model to Point Pattern on Linear Network
as.owin Convert Data To Class owin
pixellate.ppp Convert Point Pattern to Pixel Image
methods.linnet Methods for Linear Networks
Ord Generic Ord Interaction model
rescale.owin Convert Window to Another Unit of Length
quadscheme Generate a Quadrature Scheme from a Point Pattern
print.ppm Print a Fitted Point Process Model
diameter Diameter of an Object
redwoodfull California Redwoods Point Pattern (Entire Dataset)
perimeter Perimeter Length of Window
quantile.im Sample Quantiles of Pixel Image
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
plot.kppm Plot a fitted cluster point process
pppdist Distance Between Two Point Patterns
summary.quad Summarizing a Quadrature Scheme
setcov Set Covariance of a Window
rMosaicField Mosaic Random Field
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
slrm Spatial Logistic Regression
thomas.estK Fit the Thomas Point Process by Minimum Contrast
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
Kinhom Inhomogeneous K-function
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
Hest Spherical Contact Distribution Function
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
dirichlet.weights Compute Quadrature Weights Based on Dirichlet Tessellation
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
is.empty Test Whether An Object Is Empty
marks Marks of a Point Pattern
nndist.pp3 Nearest neighbour distances in three dimensions
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
is.ppp Test Whether An Object Is A Point Pattern
pairdist.ppp Pairwise distances
as.function.fv Convert Function Value Table to Function
discretise Safely Convert Point Pattern Window to Binary Mask
plot.linnet Plot a linear network
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
shift.im Apply Vector Translation To Pixel Image
simplenet Simple Example of Linear Network
stieltjes Compute Integral of Function Against Cumulative Distribution
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
summary.splitppp Summary of a Split Point Pattern
Extract.listof Extract or Replace Subset of a List of Things
default.dummy Generate a Default Pattern of Dummy Points
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
formula.ppm Model Formulae for Gibbs Point Process Models
ewcdf Weighted Empirical Cumulative Distribution Function
is.im Test Whether An Object Is A Pixel Image
Kdot.inhom Inhomogeneous Multitype K Dot Function
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
is.owin Test Whether An Object Is A Window
ord.family Ord Interaction Process Family
as.matrix.im Convert Pixel Image to Matrix or Array
concatxy Concatenate x,y Coordinate Vectors
clarkevans.test Clark and Evans Test
Kres Residual K Function
methods.lppm Methods for Fitted Point Process Models on a Linear Network
coef.ppm Coefficients of Fitted Point Process Model
gpc2owin Convert Polygonal Region into Different Format
localKinhom Inhomogeneous Neighbourhood Density Function
pixellate Convert Spatial Object to Pixel Image
pp3 Three Dimensional Point Pattern
rMaternII Simulate Matern Model II
rescale.psp Convert Line Segment Pattern to Another Unit of Length
reduced.sample Reduced Sample Estimator using Histogram Data
rcell Simulate Baddeley-Silverman Cell Process
simdat Simulated Point Pattern
runifpointOnLines Generate N Uniform Random Points On Line Segments
swedishpines Swedish Pines Point Pattern
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
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Date 2011-09-23
License GPL (>= 2)
URL http://www.spatstat.org
Packaged 2011-09-23 03:05:50 UTC; adrian
Repository CRAN
Date/Publication 2011-09-23 12:18:30
depends base (>= 2.13.0) , deldir (>= 0.0-10) , graphics , mgcv , R (>= 2.13.0) , stats , utils
suggests gpclib , maptools , RandomFields (>= 2.0) , rpanel , scatterplot3d , sm , spatial , tkrplot
Contributors Rolf Turner, Adrian Baddeley

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