spatstat v1.24-1

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by Adrian Baddeley

Spatial Point Pattern analysis, model-fitting, simulation, tests

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Functions in spatstat

Name Description
Gcom Model Compensator of Nearest Neighbour Function
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
amacrine Hughes' Amacrine Cell Data
anova.ppm ANOVA for Fitted Point Process Models
circumradius Circumradius and Diameter of a Linear Network
Extract.msr Extract Subset of Signed or Vector Measure
Jest Estimate the J-function
Jcross Multitype J Function (i-to-j)
as.rectangle Window Frame
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
Hardcore The Hard Core Point Process Model
Extract.psp Extract Subset of Line Segment Pattern
Softcore The Soft Core Point Process Model
Extract.ppp Extract or Replace Subset of Point Pattern
crossing.psp Crossing Points of Two Line Segment Patterns
affine Apply Affine Transformation
Extract.quad Subset of Quadrature Scheme
Extract.tess Extract or Replace Subset of Tessellation
affine.owin Apply Affine Transformation To Window
convexhull Convex Hull
bronzefilter Bronze gradient filter data
bind.fv Combine Function Value Tables
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
LennardJones The Lennard-Jones Potential
affine.psp Apply Affine Transformation To Line Segment Pattern
Jdot Multitype J Function (i-to-any)
Emark Diagnostics for random marking
contour.im Contour plot of pixel image
applynbd Apply Function to Every Neighbourhood in a Point Pattern
Lcross.inhom Inhomogeneous Cross Type L Function
Kcross.inhom Inhomogeneous Cross K Function
betacells Beta Ganglion Cells in Cat Retina
Gres Residual G Function
Kest K-function
area.owin Area of a Window
bermantest Berman's Tests for Point Process Model
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
Lest L-function
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
affine.ppp Apply Affine Transformation To Point Pattern
contour.listof Plot a List of Things
corners Corners of a rectangle
compareFit Residual Diagnostics for Multiple Fitted Models
envelope.lpp Envelope for Point Patterns on Linear Network
Gest Nearest Neighbour Distance Function G
copper Berman-Huntington points and lines data
Kmodel K function of a model
default.dummy Generate a Default Pattern of Dummy Points
colourmap Colour Lookup Tables
angles.psp Orientation Angles of Line Segments
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
convexhull.xy Convex Hull of Points
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
Fiksel The Fiksel Interaction
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
Fest Estimate the empty space function F
clarkevans Clark and Evans Aggregation Index
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
Iest Estimate the I-function
bounding.box.xy Convex Hull of Points
BadGey Hybrid Geyer Point Process Model
clickppp Interactively Add Points
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
as.ppp Convert Data To Class ppp
bramblecanes Hutchings' Bramble Canes data
Lcross Multitype L-function (cross-type)
border Border Region of a Window
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
Jmulti Marked J Function
finpines Pine saplings in Finland.
Kmeasure Reduced Second Moment Measure
chorley Chorley-Ribble Cancer Data
bdist.pixels Distance to Boundary of Window
fv.object Function Value Table
Gfox Foxall's Distance Functions
as.function.fv Convert Function Value Table to Function
Extract.splitppp Extract or Replace Sub-Patterns
blur Apply Gaussian Blur to a Pixel Image
bdist.points Distance to Boundary of Window
Extract.listof Extract or Replace Subset of a List of Things
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
Kinhom Inhomogeneous K-function
centroid.owin Centroid of a window
intersect.owin Intersection, Union or Set Subtraction of Two Windows
flu Influenza Virus Proteins
Ord Generic Ord Interaction model
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
hist.im Histogram of Pixel Values in an Image
Ldot.inhom Inhomogeneous Multitype L Dot Function
by.im Apply Function to Image Broken Down by Factor
Kres Residual K Function
nearestsegment Find Line Segment Nearest to Each Point
distmap.ppp Distance Map of Point Pattern
Kcross Multitype K Function (Cross-type)
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
methods.lppm Methods for Fitted Point Process Models on a Linear Network
lansing Lansing Woods Point Pattern
diameter.box3 Geometrical Calculations for Three-Dimensional Box
envelope Simulation Envelopes of Summary Function
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
as.data.frame.im Convert Pixel Image to Data Frame
distmap.owin Distance Map of Window
anemones Beadlet Anemones Data
chop.tess Subdivide a Window or Tessellation using a Set of Lines
boxx Multi-Dimensional Box
lurking Lurking variable plot
Ldot Multitype L-function (i-to-any)
Gmulti Marked Nearest Neighbour Distance Function
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
expand.owin Expand Window By Factor
clip.infline Intersect Infinite Straight Lines with a Window
crossdist.psp Pairwise distances between two different line segment patterns
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
delaunay Delaunay Triangulation of Point Pattern
Kdot.inhom Inhomogeneous Multitype K Dot Function
as.interact Extract Interaction Structure
ewcdf Weighted Empirical Cumulative Distribution Function
ganglia Beta Ganglion Cells in Cat Retina, Old Version
StraussHard The Strauss / Hard Core Point Process Model
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
nncross Nearest Neighbours Between Two Patterns
Kmulti Marked K-Function
Kcom Model Compensator of K Function
as.hyperframe Convert Data to Hyperframe
idw Inverse-distance weighted smoothing of observations at irregular points
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
distmap.psp Distance Map of Line Segment Pattern
clickjoin Interactively join vertices on a plot
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
DiggleGratton Diggle-Gratton model
demopat Artificial Data Point Pattern
fasp.object Function Arrays for Spatial Patterns
pcf.ppp Pair Correlation Function of Point Pattern
Pairwise Generic Pairwise Interaction model
dirichlet Dirichlet Tessellation of Point Pattern
F3est Empty Space Function of a Three-Dimensional Point Pattern
is.ppp Test Whether An Object Is A Point Pattern
Extract.fasp Extract Subset of Function Array
density.psp Kernel Smoothing of Line Segment Pattern
nndist.psp Nearest neighbour distances between line segments
markvario Mark Variogram
crossdist.ppp Pairwise distances between two different point patterns
bdist.tiles Distance to Boundary of Window
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
logLik.ppm Log Likelihood and AIC for Point Process Model
rpoispp Generate Poisson Point Pattern
compatible Test Whether Objects Are Compatible
colourtools Convert and Compare Colours in Different Formats
clickpoly Interactively Define a Polygon
is.ppm Test Whether An Object Is A Fitted Point Process Model
japanesepines Japanese Pines Point Pattern
flipxy Exchange X and Y Coordinates
dilated.areas Areas of Morphological Dilations
envelope.envelope Recompute Envelopes
dirichlet.weights Compute Quadrature Weights Based on Dirichlet Tessellation
Strauss The Strauss Point Process Model
Geyer Geyer's Saturation Point Process Model
Kdot Multitype K Function (i-to-any)
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
closing Morphological Closing
ponderosa Ponderosa Pine Tree Point Pattern
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
as.im Convert to Pixel Image
as.polygonal Convert a Window to a Polygonal Window
rshift.ppp Randomly Shift a Point Pattern
letterR Window in Shape of Letter R
longleaf Longleaf Pines Point Pattern
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
pixellate Convert Spatial Object to Pixel Image
ppm Fit Point Process Model to Data
is.im Test Whether An Object Is A Pixel Image
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
quad.object Class of Quadrature Schemes
rMaternI Simulate Matern Model I
discretise Safely Convert Point Pattern Window to Binary Mask
Kest.fft K-function using FFT
pppdist Distance Between Two Point Patterns
gridweights Compute Quadrature Weights Based on Grid Counts
pairdist Pairwise distances
Extract.im Extract Subset of Image
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
is.owin Test Whether An Object Is A Window
nndist.pp3 Nearest neighbour distances in three dimensions
fryplot Fry Plot of Point Pattern
interp.im Interpolate a Pixel Image
is.empty Test Whether An Object Is Empty
plot.msr Plot a Signed or Vector-Valued Measure
distmap Distance Map
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
layered Create List of Plotting Layers
diameter.owin Diameter of a Window
spatstat-deprecated Deprecated spatstat functions
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
plot.hyperframe Plot Entries in a Hyperframe
MultiStrauss The Multitype Strauss Point Process Model
nndist Nearest neighbour distances
distfun Distance Map as a Function
print.ppm Print a Fitted Point Process Model
pixelquad Quadrature Scheme Based on Pixel Grid
is.convex Test Whether a Window is Convex
collapse.fv Collapse Several Function Tables into One
cells Biological Cells Point Pattern
is.marked.ppm Test Whether A Point Process Model is Marked
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
complement.owin Take Complement of a Window
plot.fasp Plot a Function Array
eval.fv Evaluate Expression Involving Functions
bei Tropical rain forest trees
plot.linnet Plot a linear network
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
coef.ppm Coefficients of Fitted Point Process Model
linearK Linear K Function
plot.slrm Plot a Fitted Spatial Logistic Regression
integral.im Integral of a Pixel Image
plot.linim Plot Pixel Image on Linear Network
perimeter Perimeter Length of Window
mincontrast Method of Minimum Contrast
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
is.multitype.ppm Test Whether A Point Process Model is Multitype
formula.ppm Model Formulae for Gibbs Point Process Models
inside.owin Test Whether Points Are Inside A Window
progressreport Print Progress Reports
plot.fv Plot Function Values
pool Pool Data
harmonise.im Make Pixel Images Compatible
linearpcf Linear Pair Correlation Function
smooth.ppp Spatial smoothing of observations at irregular points
redwoodfull California Redwoods Point Pattern (Entire Dataset)
plot.tess Plot a tessellation
summary.ppp Summary of a Point Pattern Dataset
pppmatching Create a Point Matching
plot.colourmap Plot a Colour Map
pairdist.pp3 Pairwise distances in Three Dimensions
AreaInter The Area Interaction Point Process Model
quadrat.test Chi-Squared Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
kppm Fit Cluster or Cox Point Process Model
profilepl Profile Maximum Pseudolikelihood
dummify Convert Data to Numeric Values by Constructing Dummy Variables
model.images Compute Images of Constructed Covariates
shift.psp Apply Vector Translation To Line Segment Pattern
discpartarea Area of Part of Disc
print.psp Print Brief Details of a Line Segment Pattern Dataset
model.frame.ppm Extract the Environment of a Point Process Model
infline Infinite Straight Lines
rgbim Create Colour-Valued Pixel Image
unnormdensity Weighted kernel smoother
hyperframe Hyper Data Frame
quadscheme Generate a Quadrature Scheme from a Point Pattern
rpoislpp Poisson Point Process on a Linear Network
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
matchingdist Distance for a Point Pattern Matching
murchison Murchison gold deposits
crossdist.default Pairwise distances between two different sets of points
concatxy Concatenate x,y Coordinate Vectors
disc Circular Window
smooth.msr Smooth a Signed or Vector-Valued Measure
rpoislinetess Poisson Line Tessellation
humberside Humberside Data on Childhood Leukaemia and Lymphoma
methods.lpp Methods for Point Patterns on a Linear Network
levelset Level Set of a Pixel Image
is.subset.owin Determine Whether One Window is Contained In Another
opening Morphological Opening
rMaternII Simulate Matern Model II
areaGain Difference of Disc Areas
shift Apply Vector Translation
plot.im Plot a Pixel Image
identify.ppp Identify Points in a Point Pattern
pcf.fasp Pair Correlation Function obtained from array of K functions
superimpose Superimpose Several Geometric Patterns
summary.listof Summary of a List of Things
incircle Find Largest Circle Inside Window
pcfcross Multitype pair correlation function (cross-type)
lut Lookup Tables
runifdisc Generate N Uniform Random Points in a Disc
lengths.psp Lengths of Line Segments
npoints Number of Points in a Point Pattern
project2segment Move Point To Nearest Line
cut.ppp Classify Points in a Point Pattern
persp.im Perspective Plot of Pixel Image
quantile.im Sample Quantiles of Pixel Image
predict.ppm Prediction from a Fitted Point Process Model
pairdist.psp Pairwise distances between line segments
simulate.kppm Simulate a Fitted Cluster Point Process Model
pairdist.default Pairwise distances
print.im Print Brief Details of an Image
marks Marks of a Point Pattern
update.kppm Update a Fitted Cluster Point Process Model
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
Linhom L-function
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
iplot Point and Click Interface for Displaying a Point Pattern
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
methods.distfun Methods for Distance Functions
quadrat.test.splitppp Chi-Squared Test of CSR for Split Point Pattern
spokes Spokes pattern of dummy points
nndist.ppx Nearest Neighbour Distances in Any Dimensions
nbfires Point Patterns of New Brunswick Forest Fires
plot.owin Plot a Spatial Window
print.quad Print a Quadrature Scheme
rknn Theoretical Distribution of Nearest Neighbour Distance
rThomas Simulate Thomas Process
rLGCP Simulate Log-Gaussian Cox Process
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
pairwise.family Pairwise Interaction Process Family
linim Create Pixel Image on Linear Network
split.ppp Divide Point Pattern into Sub-patterns
runiflpp Uniform Random Points on a Linear Network
rMosaicField Mosaic Random Field
reach Interaction Distance of a Point Process
pool.fasp Pool Data from Several Function Arrays
summary.ppm Summarizing a Fitted Point Process Model
lineardisc Compute Disc of Given Radius in Linear Network
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
rmh.ppm Simulate from a Fitted Point Process Model
pixellate.ppp Convert Point Pattern to Pixel Image
rlinegrid Generate grid of parallel lines with random displacement
Extract.fv Extract Subset of Function Values
unitname Name for Unit of Length
gridcentres Rectangular grid of points
pp3 Three Dimensional Point Pattern
rotate.owin Rotate a Window
multiplicity.ppp Count Multiplicity of Duplicate Points
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
shift.im Apply Vector Translation To Pixel Image
scan.test Spatial Scan Test
spatstat.options Internal Options in Spatstat Package
hamster Aherne's hamster tumour data
data.ppm Extract Original Data from a Fitted Point Process Model
urkiola Urkiola Woods Point Pattern
vertices Vertices of a Window
localK Neighbourhood density function
eval.fasp Evaluate Expression Involving Function Arrays
rmpoint Generate N Random Multitype Points
sumouter Compute Quadratic Forms
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
simulate.ppm Simulate a Fitted Gibbs Point Process Model
methods.pp3 Methods for three-dimensional point patterns
pairsat.family Saturated Pairwise Interaction Point Process Family
pairdist.ppp Pairwise distances
msr Signed or Vector-Valued Measure
scaletointerval Rescale Data to Lie Between Specified Limits
linnet Create a Linear Network
marks.psp Marks of a Line Segment Pattern
rshift.splitppp Randomly Shift a List of Point Patterns
slrm Spatial Logistic Regression
methods.ppx Methods for Multidimensional Space-Time Point Patterns
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
rhohat Smoothing Estimate of Covariate Transformation
compatible.fv Test Whether Function Objects Are Compatible
harmonic Basis for Harmonic Functions
runifpointOnLines Generate N Uniform Random Points On Line Segments
pppmatching.object Class of Point Matchings
plot.ppp plot a Spatial Point Pattern
print.ppp Print Brief Details of a Point Pattern Dataset
eroded.areas Areas of Morphological Erosions
lpp Create Point Pattern on Linear Network
rescale.psp Convert Line Segment Pattern to Another Unit of Length
rescale.im Convert Pixel Image to Another Unit of Length
rpoint Generate N Random Points
plot.ppm plot a Fitted Point Process Model
split.im Divide Image Into Sub-images
whist Weighted Histogram
shapley Galaxies in the Shapley Supercluster
pairs.im Scatterplot Matrix for Pixel Images
quadratresample Resample a Point Pattern by Resampling Quadrats
which.max.im Identify Pixelwise Maximum of Several Pixel Images
is.marked Test Whether Marks Are Present
eval.im Evaluate Expression Involving Pixel Images
quadrats Divide Region into Quadrats
tess Create a Tessellation
plot.kstest Plot a Spatial Kolmogorov-Smirnov Test
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
print.owin Print Brief Details of a Spatial Window
pool.rat Pool Data from Several Ratio Objects
trim.rectangle Cut margins from rectangle
ppp Create a Point Pattern
plot.listof Plot a List of Things
pairdist.lpp Pairwise shortest-path distances between points on a linear network
imcov Spatial Covariance of a Pixel Image
scanpp Read Point Pattern From Data File
rStrauss Perfect Simulation of the Strauss Process
runifpoint Generate N Uniform Random Points
rpoisline Generate Poisson Random Line Process
as.data.frame.ppp Coerce Point Pattern to a Data Frame
tiles Extract List of Tiles in a Tessellation
ord.family Ord Interaction Process Family
union.quad Union of Data and Dummy Points
default.expand Compute Expansion Window for Simulation
pool.envelope Pool Data from Several Envelopes
suffstat Sufficient Statistic of Point Process Model
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
nnwhich.ppx Nearest Neighbours in Any Dimensions
smooth.fv Apply Smoothing to Function Values
summary.im Summarizing a Pixel Image
density.ppp Kernel Smoothed Intensity of Point Pattern
predict.kppm Prediction from a Fitted Cluster Point Process Model
identify.psp Identify Segments in a Line Segment Pattern
rcell Simulate Baddeley-Silverman Cell Process
residuals.ppm Residuals for Fitted Point Process Model
simdat Simulated Point Pattern
methods.units Methods for Units
summary.psp Summary of a Line Segment Pattern Dataset
swedishpines Swedish Pines Point Pattern
nnwhich.pp3 Nearest neighbours in three dimensions
rMatClust Simulate Matern Cluster Process
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
methods.box3 Methods for Three-Dimensional Box
nztrees New Zealand Trees Point Pattern
owin Create a Window
shift.owin Apply Vector Translation To Window
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
summary.owin Summary of a Spatial Window
methods.linnet Methods for Linear Networks
unique.ppp Extract Unique Points from a Spatial Point Pattern
varblock Estimate Variance of Summary Statistic by Subdivision
plot.bermantest Plot Result of Berman Test
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
plot.pp3 Plot a three-dimensional point pattern
rstrat Simulate Stratified Random Point Pattern
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
intersect.tess Intersection of Two Tessellations
plot.envelope Plot a Simulation Envelope
pointsOnLines Place Points Evenly Along Specified Lines
selfcrossing.psp Crossing Points in a Line Segment Pattern
dilation Morphological Dilation
plot.layered Layered Plot
nearest.raster.point Find Pixel Nearest to a Given Point
diameter Diameter of an Object
as.box3 Convert Data to Three-Dimensional Box
rthin Random Thinning
ripras Estimate window from points alone
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
plot.psp plot a Spatial Line Segment Pattern
rpoisppx Generate Poisson Point Pattern in Any Dimensions
rshift Random Shift
simplenet Simple Example of Linear Network
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
as.owin Convert Data To Class owin
pixellate.psp Convert Line Segment Pattern to Pixel Image
rshift.psp Randomly Shift a Line Segment Pattern
plot.kppm Plot a fitted cluster point process
localKinhom Inhomogeneous Neighbourhood Density Function
ppm.object Class of Fitted Point Process Models
summary.splitppp Summary of a Split Point Pattern
tile.areas Compute Areas of Tiles in a Tessellation
rjitter Random Perturbation of a Point Pattern
latest.news Print News About Latest Version of Package
spruces Spruces Point Pattern
logLik.slrm Loglikelihood of Spatial Logistic Regression
plot.quad plot a Spatial Quadrature Scheme
methods.rhohat Methods for Intensity Functions of Spatial Covariate
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
simplify.owin Approximate a Polygon by a Simpler Polygon
fv Create a Function Value Table
thomas.estK Fit the Thomas Point Process by Minimum Contrast
zapsmall.im Rounding of Pixel Values
owin.object Class owin
ppp.object Class of Point Patterns
rsyst Simulate systematic random point pattern
with.fv Evaluate an Expression in a Function Table
model.depends Identify Covariates Involved in each Model Term
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
lppm Fit Point Process Model to Point Pattern on Linear Network
shift.ppp Apply Vector Translation To Point Pattern
stieltjes Compute Integral of Function Against Cumulative Distribution
fitted.ppm Fitted Conditional Intensity for Point Process Model
model.matrix.ppm Extract Design Matrix from Point Process Model
heather Diggle's Heather Data
istat Point and Click Interface for Exploratory Analysis of Point Pattern
compatible.im Test Whether Pixel Images Are Compatible
psp.object Class of Line Segment Patterns
pcf Pair Correlation Function
rMosaicSet Mosaic Random Set
raster.x Cartesian Coordinates for a Pixel Raster
miplot Morishita Index Plot
is.multitype Test whether Object is Multitype
rotate.ppp Rotate a Point Pattern
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
periodify Make Periodic Copies of a Spatial Pattern
rotate Rotate
reduced.sample Reduced Sample Estimator using Histogram Data
pcfinhom Inhomogeneous Pair Correlation Function
square Square Window
Replace.im Reset Values in Subset of Image
rescale.owin Convert Window to Another Unit of Length
rotate.psp Rotate a Line Segment Pattern
Hest Spherical Contact Distribution Function
Kscaled Locally Scaled K-function
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
as.psp Convert Data To Class psp
pcfdot Multitype pair correlation function (i-to-any)
allstats Calculate four standard summary functions of a point pattern.
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
fitin.ppm Extract the Interaction from a Fitted Point Process Model
markconnect Mark Connection Function
markcorr Mark Correlation Function
is.stationary Recognise Stationary and Poisson Point Process Models
methods.boxx Methods for Multi-Dimensional Box
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
quadratcount Quadrat counting for a point pattern
rescale.ppp Convert Point Pattern to Another Unit of Length
rNeymanScott Simulate Neyman-Scott Process
nnwhich Nearest neighbour
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
unmark Remove Marks
kstest.ppm Kolmogorov-Smirnov Test for Point Process Model
rescue.rectangle Convert Window Back To Rectangle
spatstat-package The Spatstat Package
deltametric Delta Metric
psp Create a Line Segment Pattern
kaplan.meier Kaplan-Meier Estimator using Histogram Data
rat Ratio object
as.tess Convert Data To Tessellation
update.ppm Update a Fitted Point Process Model
Saturated Saturated Pairwise Interaction model
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
MultiHard The Multitype Hard Core Point Process Model
compatible.fasp Test Whether Function Arrays Are Compatible
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
K3est K-function of a Three-Dimensional Point Pattern
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
cbind.hyperframe Combine Hyperframes by Rows or by Columns
gpc2owin Convert Polygonal Region into Different Format
nnclean Nearest Neighbour Clutter Removal
redwood California Redwoods Point Pattern (Ripley's Subset)
pixellate.owin Convert Window to Pixel Image
relrisk Nonparametric Estimate of Spatially-Varying Relative Risk
sharpen Data Sharpening of Point Pattern
clarkevans.test Clark and Evans Test
Poisson Poisson Point Process Model
npfun Dummy Function Returns Number of Points
rGaussPoisson Simulate Gauss-Poisson Process
ants Harkness-Isham ants' nests data
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
box3 Three-Dimensional Box
areaLoss Difference of Disc Areas
cut.im Convert Pixel Image from Numeric to Factor
chicago Chicago Street Crime Data
as.mask Pixel Image Approximation of a Window
eem Exponential Energy Marks
erosion Morphological Erosion
bounding.box Bounding Box of a Window or Point Pattern
append.psp Combine Two Line Segment Patterns
im.object Class of Images
localpcf Local pair correlation function
pairdist.ppx Pairwise Distances in Any Dimensions
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
midpoints.psp Midpoints of Line Segment Pattern
plot.plotppm Plot a plotppm Object Created by plot.ppm
residualspaper Data and Code From JRSS Discussion Paper on Residuals
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
rSSI Simulate Simple Sequential Inhibition
spatstat-internal Internal spatstat functions
pcf.fv Pair Correlation Function obtained from K Function
plot.splitppp Plot a List of Point Patterns
ppx Multidimensional Space-Time Point Pattern
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
im Create a Pixel Image Object
rlabel Random Re-Labelling of Point Pattern
crossdist Pairwise distances
connected Connected components of an image or window
OrdThresh Ord's Interaction model
inforder.family Infinite Order Interaction Family
nsegments Number of Line Segments in a Line Segment Pattern
is.multitype.ppp Test Whether A Point Pattern is Multitype
markcorrint Mark Correlation Integral
linearKinhom Inhomogeneous Linear K Function
rescale Convert dataset to another unit of length
predict.lppm Predict Point Process Model on Linear Network
is.marked.ppp Test Whether A Point Pattern is Marked
endpoints.psp Endpoints of Line Segment Pattern
runifpoint3 Generate N Uniform Random Points in Three Dimensions
methods.kppm Methods for Cluster Point Process Models
rmpoispp Generate Multitype Poisson Point Pattern
setcov Set Covariance of a Window
volume Volume of an Object
summary.quad Summarizing a Quadrature Scheme
as.matrix.im Convert Pixel Image to Matrix or Array
runifpointx Generate N Uniform Random Points in Any Dimensions
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Details

Date 2011-10-22
License GPL (>= 2)
URL http://www.spatstat.org
Packaged 2011-10-22 12:30:20 UTC; adrian
Repository CRAN
Date/Publication 2011-10-23 15:40:54
depends base (>= 2.13.0) , deldir (>= 0.0-10) , graphics , mgcv , R (>= 2.13.0) , stats , utils
suggests gpclib , maptools , RandomFields (>= 2.0) , rpanel , scatterplot3d , sm , spatial , tkrplot
Contributors Rolf Turner, Adrian Baddeley

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