spatstat v1.24-2

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by Adrian Baddeley

Spatial Point Pattern analysis, model-fitting, simulation, tests

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Functions in spatstat

Name Description
Extract.msr Extract Subset of Signed or Vector Measure
Strauss The Strauss Point Process Model
bramblecanes Hutchings' Bramble Canes data
chop.tess Subdivide a Window or Tessellation using a Set of Lines
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
concatxy Concatenate x,y Coordinate Vectors
convexhull Convex Hull
gridweights Compute Quadrature Weights Based on Grid Counts
diameter.owin Diameter of a Window
im Create a Pixel Image Object
levelset Level Set of a Pixel Image
letterR Window in Shape of Letter R
lut Lookup Tables
miplot Morishita Index Plot
ord.family Ord Interaction Process Family
pairdist.ppx Pairwise Distances in Any Dimensions
pcf.fv Pair Correlation Function obtained from K Function
plot.bermantest Plot Result of Berman Test
psp.object Class of Line Segment Patterns
pixellate.owin Convert Window to Pixel Image
quadrats Divide Region into Quadrats
rjitter Random Perturbation of a Point Pattern
Extract.ppp Extract or Replace Subset of Point Pattern
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
Extract.quad Subset of Quadrature Scheme
Kmulti Marked K-Function
amacrine Hughes' Amacrine Cell Data
Triplets The Triplet Point Process Model
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
areaLoss Difference of Disc Areas
Extract.tess Extract or Replace Subset of Tessellation
as.tess Convert Data To Tessellation
distmap.psp Distance Map of Line Segment Pattern
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
envelope.envelope Recompute Envelopes
as.hyperframe Convert Data to Hyperframe
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
Extract.fasp Extract Subset of Function Array
closing Morphological Closing
Geyer Geyer's Saturation Point Process Model
affine Apply Affine Transformation
applynbd Apply Function to Every Neighbourhood in a Point Pattern
marks.psp Marks of a Line Segment Pattern
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
complement.owin Take Complement of a Window
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
Gres Residual G Function
OrdThresh Ord's Interaction model
fitted.ppm Fitted Conditional Intensity for Point Process Model
bounding.box Bounding Box of a Window or Point Pattern
Kdot.inhom Inhomogeneous Multitype K Dot Function
bei Tropical rain forest trees
affine.psp Apply Affine Transformation To Line Segment Pattern
Fest Estimate the empty space function F
Extract.im Extract Subset of Image
AreaInter The Area Interaction Point Process Model
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
bdist.pixels Distance to Boundary of Window
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
methods.lppm Methods for Fitted Point Process Models on a Linear Network
clickpoly Interactively Define a Polygon
compatible Test Whether Objects Are Compatible
methods.units Methods for Units
contour.listof Plot a List of Things
chorley Chorley-Ribble Cancer Data
pcf Pair Correlation Function
betacells Beta Ganglion Cells in Cat Retina
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
is.marked.ppp Test Whether A Point Pattern is Marked
Ldot.inhom Inhomogeneous Multitype L Dot Function
Jcross Multitype J Function (i-to-j)
demopat Artificial Data Point Pattern
affine.ppp Apply Affine Transformation To Point Pattern
kppm Fit Cluster or Cox Point Process Model
Kcross Multitype K Function (Cross-type)
ppp Create a Point Pattern
dilation Morphological Dilation
as.ppp Convert Data To Class ppp
progressreport Print Progress Reports
clickjoin Interactively join vertices on a plot
plot.envelope Plot a Simulation Envelope
centroid.owin Centroid of a window
envelope.lpp Envelope for Point Patterns on Linear Network
flu Influenza Virus Proteins
Ldot Multitype L-function (i-to-any)
dirichlet Dirichlet Tessellation of Point Pattern
Linhom L-function
discretise Safely Convert Point Pattern Window to Binary Mask
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
plot.fasp Plot a Function Array
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
is.ppm Test Whether An Object Is A Fitted Point Process Model
plot.kstest Plot a Spatial Kolmogorov-Smirnov Test
identify.ppp Identify Points in a Point Pattern
diameter.box3 Geometrical Calculations for Three-Dimensional Box
intersect.owin Intersection, Union or Set Subtraction of Two Windows
StraussHard The Strauss / Hard Core Point Process Model
box3 Three-Dimensional Box
endpoints.psp Endpoints of Line Segment Pattern
distmap.ppp Distance Map of Point Pattern
bermantest Berman's Tests for Point Process Model
bind.fv Combine Function Value Tables
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
erosion Morphological Erosion
redwood California Redwoods Point Pattern (Ripley's Subset)
identify.psp Identify Segments in a Line Segment Pattern
lengths.psp Lengths of Line Segments
ewcdf Weighted Empirical Cumulative Distribution Function
infline Infinite Straight Lines
inforder.family Infinite Order Interaction Family
rescale.im Convert Pixel Image to Another Unit of Length
msr Signed or Vector-Valued Measure
eval.im Evaluate Expression Involving Pixel Images
localK Neighbourhood density function
as.data.frame.im Convert Pixel Image to Data Frame
residualspaper Data and Code From JRSS Discussion Paper on Residuals
plot.pp3 Plot a three-dimensional point pattern
bdist.points Distance to Boundary of Window
print.ppm Print a Fitted Point Process Model
as.box3 Convert Data to Three-Dimensional Box
distmap.owin Distance Map of Window
rpoisline Generate Poisson Random Line Process
copper Berman-Huntington points and lines data
layered Create List of Plotting Layers
matchingdist Distance for a Point Pattern Matching
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
is.convex Test Whether a Window is Convex
shift.ppp Apply Vector Translation To Point Pattern
cut.im Convert Pixel Image from Numeric to Factor
linnet Create a Linear Network
marks Marks of a Point Pattern
plot.listof Plot a List of Things
markcorrint Mark Correlation Integral
ppm Fit Point Process Model to Data
collapse.fv Collapse Several Function Tables into One
linearK Linear K Function
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
plot.linim Plot Pixel Image on Linear Network
rshift.psp Randomly Shift a Line Segment Pattern
Emark Diagnostics for random marking
Jmulti Marked J Function
reduced.sample Reduced Sample Estimator using Histogram Data
pcfdot Multitype pair correlation function (i-to-any)
is.stationary Recognise Stationary and Poisson Point Process Models
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
union.quad Union of Data and Dummy Points
methods.boxx Methods for Multi-Dimensional Box
plot.quad plot a Spatial Quadrature Scheme
mincontrast Method of Minimum Contrast
predict.lppm Predict Point Process Model on Linear Network
flipxy Exchange X and Y Coordinates
pool.fasp Pool Data from Several Function Arrays
ppx Multidimensional Space-Time Point Pattern
rMosaicSet Mosaic Random Set
as.interact Extract Interaction Structure
plot.layered Layered Plot
plot.fv Plot Function Values
eem Exponential Energy Marks
pointsOnLines Place Points Evenly Along Specified Lines
Lest L-function
bounding.box.xy Convex Hull of Points
Kest K-function
pairsat.family Saturated Pairwise Interaction Point Process Family
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
humberside Humberside Data on Childhood Leukaemia and Lymphoma
rat Ratio object
rMaternII Simulate Matern Model II
plot.splitppp Plot a List of Point Patterns
rStrauss Perfect Simulation of the Strauss Process
quantile.im Sample Quantiles of Pixel Image
ponderosa Ponderosa Pine Tree Point Pattern
plot.im Plot a Pixel Image
rescale.psp Convert Line Segment Pattern to Another Unit of Length
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
redwoodfull California Redwoods Point Pattern (Entire Dataset)
cells Biological Cells Point Pattern
linim Create Pixel Image on Linear Network
boxx Multi-Dimensional Box
print.psp Print Brief Details of a Line Segment Pattern Dataset
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
raster.x Cartesian Coordinates for a Pixel Raster
rSSI Simulate Simple Sequential Inhibition
methods.rhohat Methods for Intensity Functions of Spatial Covariate
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
shift.im Apply Vector Translation To Pixel Image
rsyst Simulate systematic random point pattern
rescale.owin Convert Window to Another Unit of Length
spokes Spokes pattern of dummy points
update.kppm Update a Fitted Cluster Point Process Model
eval.fasp Evaluate Expression Involving Function Arrays
plot.hyperframe Plot Entries in a Hyperframe
thomas.estK Fit the Thomas Point Process by Minimum Contrast
simulate.ppm Simulate a Fitted Gibbs Point Process Model
simulate.kppm Simulate a Fitted Cluster Point Process Model
ganglia Beta Ganglion Cells in Cat Retina, Old Version
Lcross Multitype L-function (cross-type)
ripras Estimate window from points alone
rescue.rectangle Convert Window Back To Rectangle
pcfcross Multitype pair correlation function (cross-type)
fv Create a Function Value Table
summary.owin Summary of a Spatial Window
print.quad Print a Quadrature Scheme
is.im Test Whether An Object Is A Pixel Image
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
affine.owin Apply Affine Transformation To Window
tile.areas Compute Areas of Tiles in a Tessellation
triplet.family Triplet Interaction Family
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
ppp.object Class of Point Patterns
is.multitype.ppm Test Whether A Point Process Model is Multitype
is.empty Test Whether An Object Is Empty
runifdisc Generate N Uniform Random Points in a Disc
superimpose Superimpose Several Geometric Patterns
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
split.ppp Divide Point Pattern into Sub-patterns
circumradius Circumradius and Diameter of a Linear Network
trim.rectangle Cut margins from rectangle
Iest Estimate the I-function
rotate.psp Rotate a Line Segment Pattern
rthin Random Thinning
by.im Apply Function to Image Broken Down by Factor
split.im Divide Image Into Sub-images
Extract.psp Extract Subset of Line Segment Pattern
pairdist.default Pairwise distances
spatstat.options Internal Options in Spatstat Package
unique.ppp Extract Unique Points from a Spatial Point Pattern
methods.lpp Methods for Point Patterns on a Linear Network
Gest Nearest Neighbour Distance Function G
colourtools Convert and Compare Colours in Different Formats
LennardJones The Lennard-Jones Potential
model.matrix.ppm Extract Design Matrix from Point Process Model
discpartarea Area of Part of Disc
cut.ppp Classify Points in a Point Pattern
K3est K-function of a Three-Dimensional Point Pattern
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
plot.msr Plot a Signed or Vector-Valued Measure
Kest.fft K-function using FFT
nztrees New Zealand Trees Point Pattern
vertices Vertices of a Window
im.object Class of Images
MultiHard The Multitype Hard Core Point Process Model
Pairwise Generic Pairwise Interaction model
Saturated Saturated Pairwise Interaction model
psp Create a Line Segment Pattern
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
area.owin Area of a Window
spatstat-internal Internal spatstat functions
is.subset.owin Determine Whether One Window is Contained In Another
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
is.owin Test Whether An Object Is A Window
as.im Convert to Pixel Image
as.psp Convert Data To Class psp
sharpen Data Sharpening of Point Pattern
clip.infline Intersect Infinite Straight Lines with a Window
localpcf Local pair correlation function
dirichlet.weights Compute Quadrature Weights Based on Dirichlet Tessellation
nnwhich Nearest neighbour
nnwhich.pp3 Nearest neighbours in three dimensions
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
eval.fv Evaluate Expression Involving Functions
whist Weighted Histogram
unnormdensity Weighted kernel smoother
compatible.fasp Test Whether Function Arrays Are Compatible
Kcom Model Compensator of K Function
varblock Estimate Variance of Summary Statistic by Subdivision
npoints Number of Points in a Point Pattern
distfun Distance Map as a Function
anemones Beadlet Anemones Data
latest.news Print News About Latest Version of Package
hyperframe Hyper Data Frame
rlabel Random Re-Labelling of Point Pattern
as.matrix.im Convert Pixel Image to Matrix or Array
urkiola Urkiola Woods Point Pattern
Kmeasure Reduced Second Moment Measure
gridcentres Rectangular grid of points
pixellate.ppp Convert Point Pattern to Pixel Image
harmonic Basis for Harmonic Functions
runiflpp Uniform Random Points on a Linear Network
pairs.im Scatterplot Matrix for Pixel Images
as.mask Pixel Image Approximation of a Window
gpc2owin Convert Polygonal Region into Different Format
clarkevans.test Clark and Evans Test
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
logLik.slrm Loglikelihood of Spatial Logistic Regression
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
pool Pool Data
Jdot Multitype J Function (i-to-any)
MultiStrauss The Multitype Strauss Point Process Model
plot.slrm Plot a Fitted Spatial Logistic Regression
is.marked Test Whether Marks Are Present
profilepl Profile Maximum Pseudolikelihood
interp.im Interpolate a Pixel Image
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
plot.colourmap Plot a Colour Map
rMatClust Simulate Matern Cluster Process
disc Circular Window
reach Interaction Distance of a Point Process
blur Apply Gaussian Blur to a Pixel Image
rhohat Smoothing Estimate of Covariate Transformation
fv.object Function Value Table
rpoint Generate N Random Points
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
nearest.raster.point Find Pixel Nearest to a Given Point
crossdist.default Pairwise distances between two different sets of points
runifpointOnLines Generate N Uniform Random Points On Line Segments
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
distmap Distance Map
idw Inverse-distance weighted smoothing of observations at irregular points
print.owin Print Brief Details of a Spatial Window
kstest.ppm Kolmogorov-Smirnov Test for Point Process Model
owin.object Class owin
scaletointerval Rescale Data to Lie Between Specified Limits
volume Volume of an Object
rknn Theoretical Distribution of Nearest Neighbour Distance
quad.object Class of Quadrature Schemes
rgbim Create Colour-Valued Pixel Image
logLik.ppm Log Likelihood and AIC for Point Process Model
is.marked.ppm Test Whether A Point Process Model is Marked
residuals.ppm Residuals for Fitted Point Process Model
japanesepines Japanese Pines Point Pattern
simplify.owin Approximate a Polygon by a Simpler Polygon
integral.im Integral of a Pixel Image
longleaf Longleaf Pines Point Pattern
rpoislinetess Poisson Line Tessellation
nnclean Nearest Neighbour Clutter Removal
lpp Create Point Pattern on Linear Network
pairdist.ppp Pairwise distances
pixellate Convert Spatial Object to Pixel Image
opening Morphological Opening
rshift.ppp Randomly Shift a Point Pattern
pairdist.psp Pairwise distances between line segments
rshift.splitppp Randomly Shift a List of Point Patterns
shift Apply Vector Translation
rpoisppx Generate Poisson Point Pattern in Any Dimensions
pppdist Distance Between Two Point Patterns
shift.psp Apply Vector Translation To Line Segment Pattern
Jest Estimate the J-function
smooth.fv Apply Smoothing to Function Values
pppmatching Create a Point Matching
Kres Residual K Function
print.im Print Brief Details of an Image
perimeter Perimeter Length of Window
summary.ppm Summarizing a Fitted Point Process Model
project2segment Move Point To Nearest Line
quadrat.test.splitppp Chi-Squared Test of CSR for Split Point Pattern
rescale Convert dataset to another unit of length
clarkevans Clark and Evans Aggregation Index
as.polygonal Convert a Window to a Polygonal Window
sumouter Compute Quadratic Forms
crossdist Pairwise distances
rMosaicField Mosaic Random Field
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
contour.im Contour plot of pixel image
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
rmpoint Generate N Random Multitype Points
rpoislpp Poisson Point Process on a Linear Network
F3est Empty Space Function of a Three-Dimensional Point Pattern
Fiksel The Fiksel Interaction
Kcross.inhom Inhomogeneous Cross K Function
delaunay Delaunay Triangulation of Point Pattern
crossdist.psp Pairwise distances between two different line segment patterns
rpoispp Generate Poisson Point Pattern
selfcrossing.psp Crossing Points in a Line Segment Pattern
shapley Galaxies in the Shapley Supercluster
summary.listof Summary of a List of Things
spruces Spruces Point Pattern
unitname Name for Unit of Length
dummify Convert Data to Numeric Values by Constructing Dummy Variables
which.max.im Identify Pixelwise Maximum of Several Pixel Images
deltametric Delta Metric
formula.ppm Model Formulae for Gibbs Point Process Models
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
Hest Spherical Contact Distribution Function
Kscaled Locally Scaled K-function
edges2triangles List Triangles in a Graph
Ord Generic Ord Interaction model
Softcore The Soft Core Point Process Model
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
iplot Point and Click Interface for Displaying a Point Pattern
intersect.tess Intersection of Two Tessellations
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
as.data.frame.ppp Coerce Point Pattern to a Data Frame
heather Diggle's Heather Data
tess Create a Tessellation
lineardisc Compute Disc of Given Radius in Linear Network
model.frame.ppm Extract the Environment of a Point Process Model
pairwise.family Pairwise Interaction Process Family
as.function.fv Convert Function Value Table to Function
pairdist.lpp Pairwise shortest-path distances between points on a linear network
border Border Region of a Window
fasp.object Function Arrays for Spatial Patterns
is.multitype.ppp Test Whether A Point Pattern is Multitype
bronzefilter Bronze gradient filter data
methods.distfun Methods for Distance Functions
crossing.psp Crossing Points of Two Line Segment Patterns
pool.envelope Pool Data from Several Envelopes
pairdist Pairwise distances
diameter Diameter of an Object
methods.box3 Methods for Three-Dimensional Box
nsegments Number of Line Segments in a Line Segment Pattern
quadratresample Resample a Point Pattern by Resampling Quadrats
runifpointx Generate N Uniform Random Points in Any Dimensions
with.fv Evaluate an Expression in a Function Table
crossdist.ppp Pairwise distances between two different point patterns
imcov Spatial Covariance of a Pixel Image
runifpoint3 Generate N Uniform Random Points in Three Dimensions
npfun Dummy Function Returns Number of Points
istat Point and Click Interface for Exploratory Analysis of Point Pattern
linearKinhom Inhomogeneous Linear K Function
predict.ppm Prediction from a Fitted Point Process Model
quadratcount Quadrat counting for a point pattern
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
rcell Simulate Baddeley-Silverman Cell Process
rmh.ppm Simulate from a Fitted Point Process Model
methods.linnet Methods for Linear Networks
nndist Nearest neighbour distances
simdat Simulated Point Pattern
methods.pp3 Methods for three-dimensional point patterns
persp.im Perspective Plot of Pixel Image
scan.test Spatial Scan Test
pixellate.psp Convert Line Segment Pattern to Pixel Image
suffstat Sufficient Statistic of Point Process Model
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
plot.ppp plot a Spatial Point Pattern
pool.rat Pool Data from Several Ratio Objects
tiles Extract List of Tiles in a Tessellation
pppmatching.object Class of Point Matchings
print.ppp Print Brief Details of a Point Pattern Dataset
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
rThomas Simulate Thomas Process
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
rescale.ppp Convert Point Pattern to Another Unit of Length
scanpp Read Point Pattern From Data File
Gcom Model Compensator of Nearest Neighbour Function
Hardcore The Hard Core Point Process Model
setcov Set Covariance of a Window
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
compatible.fv Test Whether Function Objects Are Compatible
simplenet Simple Example of Linear Network
spatstat-deprecated Deprecated spatstat functions
stieltjes Compute Integral of Function Against Cumulative Distribution
BadGey Hybrid Geyer Point Process Model
summary.quad Summarizing a Quadrature Scheme
summary.psp Summary of a Line Segment Pattern Dataset
Extract.listof Extract or Replace Subset of a List of Things
finpines Pine saplings in Finland.
envelope Simulation Envelopes of Summary Function
Extract.fv Extract Subset of Function Values
spatstat-package The Spatstat Package
Extract.splitppp Extract or Replace Sub-Patterns
lansing Lansing Woods Point Pattern
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
linearpcf Linear Pair Correlation Function
lppm Fit Point Process Model to Point Pattern on Linear Network
anova.ppm ANOVA for Fitted Point Process Models
chicago Chicago Street Crime Data
dilated.areas Areas of Morphological Dilations
cbind.hyperframe Combine Hyperframes by Rows or by Columns
localKinhom Inhomogeneous Neighbourhood Density Function
midpoints.psp Midpoints of Line Segment Pattern
markcorr Mark Correlation Function
multiplicity.ppp Count Multiplicity of Duplicate Points
model.images Compute Images of Constructed Covariates
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
nearestsegment Find Line Segment Nearest to Each Point
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
nndist.ppx Nearest Neighbour Distances in Any Dimensions
nndist.pp3 Nearest neighbour distances in three dimensions
nnwhich.ppx Nearest Neighbours in Any Dimensions
owin Create a Window
plot.owin Plot a Spatial Window
pcfinhom Inhomogeneous Pair Correlation Function
plot.tess Plot a tessellation
rGaussPoisson Simulate Gauss-Poisson Process
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
pp3 Three Dimensional Point Pattern
predict.kppm Prediction from a Fitted Cluster Point Process Model
quadrat.test Chi-Squared Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
quadscheme Generate a Quadrature Scheme from a Point Pattern
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
rMaternI Simulate Matern Model I
rNeymanScott Simulate Neyman-Scott Process
rotate.owin Rotate a Window
relrisk Nonparametric Estimate of Spatially-Varying Relative Risk
summary.im Summarizing a Pixel Image
rmpoispp Generate Multitype Poisson Point Pattern
DiggleGratton Diggle-Gratton model
slrm Spatial Logistic Regression
shift.owin Apply Vector Translation To Window
swedishpines Swedish Pines Point Pattern
Gmulti Marked Nearest Neighbour Distance Function
append.psp Combine Two Line Segment Patterns
areaGain Difference of Disc Areas
data.ppm Extract Original Data from a Fitted Point Process Model
Replace.im Reset Values in Subset of Image
default.dummy Generate a Default Pattern of Dummy Points
harmonise.im Make Pixel Images Compatible
inside.owin Test Whether Points Are Inside A Window
methods.ppx Methods for Multidimensional Space-Time Point Patterns
kaplan.meier Kaplan-Meier Estimator using Histogram Data
model.depends Identify Covariates Involved in each Model Term
nncross Nearest Neighbours Between Two Patterns
lurking Lurking variable plot
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
pairdist.pp3 Pairwise distances in Three Dimensions
pcf.fasp Pair Correlation Function obtained from array of K functions
pixelquad Quadrature Scheme Based on Pixel Grid
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
plot.kppm Plot a fitted cluster point process
plot.linnet Plot a linear network
ppm.object Class of Fitted Point Process Models
plot.ppm plot a Fitted Point Process Model
runifpoint Generate N Uniform Random Points
summary.splitppp Summary of a Split Point Pattern
zapsmall.im Rounding of Pixel Values
summary.ppp Summary of a Point Pattern Dataset
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
smooth.msr Smooth a Signed or Vector-Valued Measure
rotate Rotate
unmark Remove Marks
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
Lcross.inhom Inhomogeneous Cross Type L Function
Kinhom Inhomogeneous K-function
coef.ppm Coefficients of Fitted Point Process Model
convexhull.xy Convex Hull of Points
compatible.im Test Whether Pixel Images Are Compatible
connected Connected components of an image or window
clickppp Interactively Add Points
Poisson Poisson Point Process Model
Kdot Multitype K Function (i-to-any)
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
compareFit Residual Diagnostics for Multiple Fitted Models
is.multitype Test whether Object is Multitype
bdist.tiles Distance to Boundary of Window
as.owin Convert Data To Class owin
fryplot Fry Plot of Point Pattern
density.ppp Kernel Smoothed Intensity of Point Pattern
markvario Mark Variogram
methods.kppm Methods for Cluster Point Process Models
incircle Find Largest Circle Inside Window
expand.owin Expand Window By Factor
colourmap Colour Lookup Tables
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
corners Corners of a rectangle
periodify Make Periodic Copies of a Spatial Pattern
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
hist.im Histogram of Pixel Values in an Image
angles.psp Orientation Angles of Line Segments
is.ppp Test Whether An Object Is A Point Pattern
plot.plotppm Plot a plotppm Object Created by plot.ppm
markconnect Mark Connection Function
eroded.areas Areas of Morphological Erosions
nbfires Point Patterns of New Brunswick Forest Fires
rLGCP Simulate Log-Gaussian Cox Process
smooth.ppp Spatial smoothing of observations at irregular points
nndist.psp Nearest neighbour distances between line segments
update.ppm Update a Fitted Point Process Model
hamster Aherne's hamster tumour data
plot.psp plot a Spatial Line Segment Pattern
rshift Random Shift
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
density.psp Kernel Smoothing of Line Segment Pattern
rlinegrid Generate grid of parallel lines with random displacement
square Square Window
rstrat Simulate Stratified Random Point Pattern
allstats Calculate four standard summary functions of a point pattern.
ants Harkness-Isham ants' nests data
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
pcf.ppp Pair Correlation Function of Point Pattern
rotate.ppp Rotate a Point Pattern
Gfox Foxall's Distance Functions
murchison Murchison gold deposits
Kmodel K function of a model
as.rectangle Window Frame
default.expand Compute Expansion Window for Simulation
fitin.ppm Extract the Interaction from a Fitted Point Process Model
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Details

Date 2011-11-11
License GPL (>= 2)
URL http://www.spatstat.org
LazyData true
LazyLoad true
Packaged 2011-11-11 04:41:38 UTC; adrian
Repository CRAN
Date/Publication 2011-11-11 11:19:29
depends base (>= 2.13.0) , deldir (>= 0.0-10) , graphics , mgcv , R (>= 2.13.0) , stats , utils
suggests gpclib , maptools , RandomFields (>= 2.0) , rpanel , scatterplot3d , sm , spatial , tkrplot
Contributors Rolf Turner, Adrian Baddeley

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