spatstat v1.25-3

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by Adrian Baddeley

Spatial Point Pattern analysis, model-fitting, simulation, tests

A package for analysing spatial data, mainly Spatial Point Patterns, including multitype/marked points and spatial covariates, in any two-dimensional spatial region. Also supports three-dimensional point patterns, and space-time point patterns in any number of dimensions. Contains over 1000 functions for plotting spatial data, exploratory data analysis, model-fitting, simulation, spatial sampling, model diagnostics, and formal inference. Data types include point patterns, line segment patterns, spatial windows, pixel images and tessellations. Exploratory methods include K-functions, nearest neighbour distance and empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with cross-validated bandwidth selection, mark correlation functions, segregation indices, mark dependence diagnostics etc. Point process models can be fitted to point pattern data using functions ppm, kppm, slrm similar to glm. Models may include dependence on covariates, interpoint interaction, cluster formation and dependence on marks. Fitted models can be simulated automatically. Also provides facilities for formal inference (such as chi-squared tests) and model diagnostics (including simulation envelopes, residuals, residual plots and Q-Q plots).

Functions in spatstat

Name Description
BadGey Hybrid Geyer Point Process Model
Extract.tess Extract or Replace Subset of Tessellation
Kmeasure Reduced Second Moment Measure
Hardcore The Hard Core Point Process Model
connected Connected components of an image or window
commonGrid Determine A Common Spatial Domain And Pixel Resolution
areaLoss Difference of Disc Areas
Extract.fasp Extract Subset of Function Array
Extract.psp Extract Subset of Line Segment Pattern
Kdot.inhom Inhomogeneous Multitype K Dot Function
Extract.im Extract Subset of Image
as.mask Pixel Image Approximation of a Window
cbind.hyperframe Combine Hyperframes by Rows or by Columns
Kcom Model Compensator of K Function
chop.tess Subdivide a Window or Tessellation using a Set of Lines
compatible.im Test Whether Pixel Images Are Compatible
bw.relrisk Cross Validated Bandwidth Selection for Relative Risk Estimation
hamster Aherne's hamster tumour data
Kest.fft K-function using FFT
Lcross.inhom Inhomogeneous Cross Type L Function
collapse.fv Collapse Several Function Tables into One
erosion Morphological Erosion
bw.smoothppp Cross Validated Bandwidth Selection for Spatial Smoothing
linim Create Pixel Image on Linear Network
pcf.fv Pair Correlation Function obtained from K Function
Gest Nearest Neighbour Distance Function G
Kres Residual K Function
hyperframe Hyper Data Frame
alltypes Calculate Summary Statistic for All Types in a Multitype Point Pattern
Jmulti Marked J Function
Jdot Multitype J Function (i-to-any)
cut.im Convert Pixel Image from Numeric to Factor
DiggleGratton Diggle-Gratton model
Extract.splitppp Extract or Replace Sub-Patterns
AreaInter The Area Interaction Point Process Model
StraussHard The Strauss / Hard Core Point Process Model
dfbetas.ppm Parameter influence measure
as.function.fv Convert Function Value Table to Function
rsyst Simulate systematic random point pattern
bei Tropical rain forest trees
is.im Test Whether An Object Is A Pixel Image
methods.pp3 Methods for three-dimensional point patterns
density.ppp Kernel Smoothed Intensity of Point Pattern
OrdThresh Ord's Interaction model
nnwhich.pp3 Nearest neighbours in three dimensions
box3 Three-Dimensional Box
as.polygonal Convert a Window to a Polygonal Window
MultiStrauss The Multitype Strauss Point Process Model
K3est K-function of a Three-Dimensional Point Pattern
MultiStraussHard The Multitype/Hard Core Strauss Point Process Model
as.tess Convert Data To Tessellation
bounding.box Bounding Box of a Window or Point Pattern
Kinhom Inhomogeneous K-function
demopat Artificial Data Point Pattern
as.data.frame.im Convert Pixel Image to Data Frame
Replace.im Reset Values in Subset of Image
colourtools Convert and Compare Colours in Different Formats
F3est Empty Space Function of a Three-Dimensional Point Pattern
finpines Pine saplings in Finland.
longleaf Longleaf Pines Point Pattern
applynbd Apply Function to Every Neighbourhood in a Point Pattern
rpoispp3 Generate Poisson Point Pattern in Three Dimensions
Extract.listof Extract or Replace Subset of a List of Things
summary.ppm Summarizing a Fitted Point Process Model
nncross Nearest Neighbours Between Two Patterns
contour.im Contour plot of pixel image
Kest K-function
edges2triangles List Triangles in a Graph
pairdist.pp3 Pairwise distances in Three Dimensions
levelset Level Set of a Pixel Image
Kcross Multitype K Function (Cross-type)
crossing.psp Crossing Points of Two Line Segment Patterns
amacrine Hughes' Amacrine Cell Data
clickpoly Interactively Define a Polygon
diameter Diameter of an Object
Jcross Multitype J Function (i-to-j)
PairPiece The Piecewise Constant Pairwise Interaction Point Process Model
ppp.object Class of Point Patterns
Emark Diagnostics for random marking
envelope Simulation Envelopes of Summary Function
Ldot.inhom Inhomogeneous Multitype L Dot Function
pcfdot.inhom Inhomogeneous Multitype Pair Correlation Function (Type-i-To-Any-Type)
plot.influence.ppm Plot Influence Measure
density.psp Kernel Smoothing of Line Segment Pattern
affine.owin Apply Affine Transformation To Window
plot.tess Plot a tessellation
model.matrix.ppm Extract Design Matrix from Point Process Model
diameter.boxx Geometrical Calculations for Multi-Dimensional Box
concatxy Concatenate x,y Coordinate Vectors
Geyer Geyer's Saturation Point Process Model
clarkevans.test Clark and Evans Test
intersect.owin Intersection, Union or Set Subtraction of Two Windows
letterR Window in Shape of Letter R
dirichlet.weights Compute Quadrature Weights Based on Dirichlet Tessellation
G3est Nearest Neighbour Distance Distribution Function of a Three-Dimensional Point Pattern
eval.fasp Evaluate Expression Involving Function Arrays
as.ppp Convert Data To Class ppp
Strauss The Strauss Point Process Model
copper Berman-Huntington points and lines data
Linhom L-function
Lcross Multitype L-function (cross-type)
Gdot Multitype Nearest Neighbour Distance Function (i-to-any)
Iest Estimate the I-function
npoints Number of Points in a Point Pattern
Poisson Poisson Point Process Model
Jest Estimate the J-function
smooth.ppp Spatial smoothing of observations at irregular points
deltametric Delta Metric
fitin.ppm Extract the Interaction from a Fitted Point Process Model
chorley Chorley-Ribble Cancer Data
multiplicity.ppp Count Multiplicity of Duplicate Points
clarkevans Clark and Evans Aggregation Index
Extract.ppp Extract or Replace Subset of Point Pattern
angles.psp Orientation Angles of Line Segments
anemones Beadlet Anemones Data
boxx Multi-Dimensional Box
border Border Region of a Window
Ord Generic Ord Interaction model
heather Diggle's Heather Data
colourmap Colour Lookup Tables
as.hyperframe Convert Data to Hyperframe
pcfdot Multitype pair correlation function (i-to-any)
dilation Morphological Dilation
circumradius Circumradius and Diameter of a Linear Network
localpcf Local pair correlation function
fitted.ppm Fitted Conditional Intensity for Point Process Model
superimpose Superimpose Several Geometric Patterns
project2segment Move Point To Nearest Line
LennardJones The Lennard-Jones Potential
DiggleGatesStibbard Diggle-Gates-Stibbard Point Process Model
as.matrix.owin Convert Pixel Image to Matrix
infline Infinite Straight Lines
flipxy Exchange X and Y Coordinates
as.owin Convert Data To Class owin
allstats Calculate four standard summary functions of a point pattern.
rstrat Simulate Stratified Random Point Pattern
nnwhich Nearest neighbour
plot.im Plot a Pixel Image
fasp.object Function Arrays for Spatial Patterns
rpoisppx Generate Poisson Point Pattern in Any Dimensions
by.ppp Apply a Function to a Point Pattern Broken Down by Factor
discretise Safely Convert Point Pattern Window to Binary Mask
lengths.psp Lengths of Line Segments
rSSI Simulate Simple Sequential Inhibition
smooth.fv Apply Smoothing to Function Values
envelope.lpp Envelope for Point Patterns on Linear Network
dummify Convert Data to Numeric Values by Constructing Dummy Variables
Tstat Third order summary statistic
spatstat-internal Internal spatstat functions
mincontrast Method of Minimum Contrast
pairdist.default Pairwise distances
lgcp.estK Fit a Log-Gaussian Cox Point Process by Minimum Contrast
Fiksel The Fiksel Interaction
rMatClust Simulate Matern Cluster Process
area.owin Area of a Window
with.fv Evaluate an Expression in a Function Table
lurking Lurking variable plot
kstest.ppm Kolmogorov-Smirnov Test for Point Process Model
pairdist Pairwise distances
model.frame.ppm Extract the Environment of a Point Process Model
nearest.raster.point Find Pixel Nearest to a Given Point
coef.slrm Coefficients of Fitted Spatial Logistic Regression Model
by.im Apply Function to Image Broken Down by Factor
Kmodel K function of a model
pcf.ppp Pair Correlation Function of Point Pattern
as.psp Convert Data To Class psp
anova.lppm ANOVA for Fitted Point Process Models on Linear Network
japanesepines Japanese Pines Point Pattern
cauchy.estK Fit the Neyman-Scott cluster process with Cauchy kernel
iplot Point and Click Interface for Displaying a Point Pattern
closing Morphological Closing
inside.owin Test Whether Points Are Inside A Window
eval.fv Evaluate Expression Involving Functions
plot.listof Plot a List of Things
endpoints.psp Endpoints of Line Segment Pattern
rPoissonCluster Simulate Poisson Cluster Process
quadscheme Generate a Quadrature Scheme from a Point Pattern
as.im Convert to Pixel Image
nearestsegment Find Line Segment Nearest to Each Point
humberside Humberside Data on Childhood Leukaemia and Lymphoma
append.psp Combine Two Line Segment Patterns
envelope.envelope Recompute Envelopes
flu Influenza Virus Proteins
markvario Mark Variogram
runifpoint Generate N Uniform Random Points
is.convex Test Whether a Window is Convex
pppdist Distance Between Two Point Patterns
methods.units Methods for Units
Extract.fv Extract Subset of Function Values
as.data.frame.hyperframe Coerce Hyperframe to Data Frame
latest.news Print News About Latest Version of Package
delaunay Delaunay Triangulation of Point Pattern
Gcross Multitype Nearest Neighbour Distance Function (i-to-j)
bdist.pixels Distance to Boundary of Window
default.rmhcontrol Set Default Control Parameters for Metropolis-Hastings Algorithm.
psp.object Class of Line Segment Patterns
affine.psp Apply Affine Transformation To Line Segment Pattern
nnclean Nearest Neighbour Clutter Removal
fv Create a Function Value Table
is.owin Test Whether An Object Is A Window
diagnose.ppm Diagnostic Plots for Fitted Point Process Model
data.ppm Extract Original Data from a Fitted Point Process Model
linearK Linear K Function
bermantest Berman's Tests for Point Process Model
is.ppm Test Whether An Object Is A Fitted Point Process Model
solutionset Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True
bdist.tiles Distance to Boundary of Window
harmonise.im Make Pixel Images Compatible
convexhull.xy Convex Hull of Points
ewcdf Weighted Empirical Cumulative Distribution Function
pairdist.ppx Pairwise Distances in Any Dimensions
integral.im Integral of a Pixel Image
quadrats Divide Region into Quadrats
pppmatching.object Class of Point Matchings
affine.ppp Apply Affine Transformation To Point Pattern
model.images Compute Images of Constructed Covariates
Extract.msr Extract Subset of Signed or Vector Measure
spatstat-deprecated Deprecated spatstat functions
rHardcore Perfect Simulation of the Hardcore Process
rmhmodel Define Point Process Model for Metropolis-Hastings Simulation.
complement.owin Take Complement of a Window
is.marked.ppp Test Whether A Point Pattern is Marked
periodify Make Periodic Copies of a Spatial Pattern
progressreport Print Progress Reports
lpp Create Point Pattern on Linear Network
rmhmodel.default Build Point Process Model for Metropolis-Hastings Simulation.
eem Exponential Energy Marks
density.splitppp Kernel Smoothed Intensity of Split Point Pattern
murchison Murchison gold deposits
gridweights Compute Quadrature Weights Based on Grid Counts
lppm Fit Point Process Model to Point Pattern on Linear Network
rMaternII Simulate Matern Model II
scan.test Spatial Scan Test
coords Extract or Change Coordinates of a Spatial or Spatiotemporal Point Pattern
matchingdist Distance for a Point Pattern Matching
nndist Nearest neighbour distances
nztrees New Zealand Trees Point Pattern
Extract.quad Subset of Quadrature Scheme
shapley Galaxies in the Shapley Supercluster
pairwise.family Pairwise Interaction Process Family
nbfires Point Patterns of New Brunswick Forest Fires
diameter.box3 Geometrical Calculations for Three-Dimensional Box
simdat Simulated Point Pattern
methods.boxx Methods for Multi-Dimensional Box
thomas.estK Fit the Thomas Point Process by Minimum Contrast
identify.psp Identify Segments in a Line Segment Pattern
ganglia Beta Ganglion Cells in Cat Retina, Old Version
pcfcross Multitype pair correlation function (cross-type)
methods.kppm Methods for Cluster Point Process Models
matclust.estpcf Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation
localK Neighbourhood density function
km.rs Kaplan-Meier and Reduced Sample Estimator using Histograms
simplify.owin Approximate a Polygon by a Simpler Polygon
rmhcontrol Set Control Parameters for Metropolis-Hastings Algorithm.
tiles Extract List of Tiles in a Tessellation
layered Create List of Plotting Layers
lut Lookup Tables
dilated.areas Areas of Morphological Dilations
pcf.fasp Pair Correlation Function obtained from array of K functions
pcfinhom Inhomogeneous Pair Correlation Function
pcf Pair Correlation Function
crossdist.pp3 Pairwise distances between two different three-dimensional point patterns
effectfun Compute Fitted Effect of a Spatial Covariate in a Point Process Model
plot.colourmap Plot a Colour Map
compatible.fv Test Whether Function Objects Are Compatible
vcov.kppm Variance-Covariance Matrix for a Fitted Cluster Point Process Model
pixellate.ppp Convert Point Pattern to Pixel Image
imcov Spatial Covariance of a Pixel Image
compareFit Residual Diagnostics for Multiple Fitted Models
pairs.im Scatterplot Matrix for Pixel Images
quadrat.test Chi-Squared Dispersion Test for Spatial Point Pattern Based on Quadrat Counts
pixellate.psp Convert Line Segment Pattern to Pixel Image
compatible Test Whether Objects Are Compatible
kppm Fit Cluster or Cox Point Process Model
compatible.fasp Test Whether Function Arrays Are Compatible
markstat Summarise Marks in Every Neighbourhood in a Point Pattern
ippm Optimise Irregular Trend Parameters in Point Process Model
rjitter Random Perturbation of a Point Pattern
pp3 Three Dimensional Point Pattern
plot.fasp Plot a Function Array
pixellate.owin Convert Window to Pixel Image
methods.distfun Methods for Distance Functions
as.matrix.im Convert Pixel Image to Matrix or Array
shift.owin Apply Vector Translation To Window
logLik.slrm Loglikelihood of Spatial Logistic Regression
rmhmodel.list Define Point Process Model for Metropolis-Hastings Simulation.
summary.listof Summary of a List of Things
dummy.ppm Extract Dummy Points Used to Fit a Point Process Model
areaGain Difference of Disc Areas
is.subset.owin Determine Whether One Window is Contained In Another
bramblecanes Hutchings' Bramble Canes data
clip.infline Intersect Infinite Straight Lines with a Window
gridcentres Rectangular grid of points
pixellate Convert Spatial Object to Pixel Image
nndist.pp3 Nearest neighbour distances in three dimensions
vertices Vertices of a Window
ord.family Ord Interaction Process Family
plot.layered Layered Plot
bw.diggle Cross Validated Bandwidth Selection for Kernel Density
rotate.psp Rotate a Line Segment Pattern
union.quad Union of Data and Dummy Points
rshift.splitppp Randomly Shift a List of Point Patterns
as.data.frame.psp Coerce Line Segment Pattern to a Data Frame
runiflpp Uniform Random Points on a Linear Network
corners Corners of a rectangle
rknn Theoretical Distribution of Nearest Neighbour Distance
whist Weighted Histogram
default.dummy Generate a Default Pattern of Dummy Points
unnormdensity Weighted kernel smoother
bind.fv Combine Function Value Tables
quantile.im Sample Quantiles of Pixel Image
shift.ppp Apply Vector Translation To Point Pattern
plot.hyperframe Plot Entries in a Hyperframe
rescale.psp Convert Line Segment Pattern to Another Unit of Length
pointsOnLines Place Points Evenly Along Specified Lines
thomas.estpcf Fit the Thomas Point Process by Minimum Contrast
rMosaicSet Mosaic Random Set
plot.envelope Plot a Simulation Envelope
plot.kstest Plot a Spatial Kolmogorov-Smirnov Test
pppmatching Create a Point Matching
rescale.im Convert Pixel Image to Another Unit of Length
which.max.im Identify Pixelwise Maximum of Several Pixel Images
gpc2owin Convert Polygonal Region into Different Format
qqplot.ppm Q-Q Plot of Residuals from Fitted Point Process Model
update.kppm Update a Fitted Cluster Point Process Model
predict.slrm Predicted or Fitted Values from Spatial Logistic Regression
rLGCP Simulate Log-Gaussian Cox Process
is.stationary Recognise Stationary and Poisson Point Process Models
predict.ppm Prediction from a Fitted Point Process Model
distmap.ppp Distance Map of Point Pattern
rthin Random Thinning
rpoint Generate N Random Points
distmap Distance Map
spatstat.options Internal Options in Spatstat Package
rhohat Smoothing Estimate of Covariate Transformation
split.im Divide Image Into Sub-images
reduced.sample Reduced Sample Estimator using Histogram Data
im.object Class of Images
adaptive.density Intensity Estimate of Point Pattern Using Tessellation
rat Ratio object
runifpointx Generate N Uniform Random Points in Any Dimensions
crossdist.ppp Pairwise distances between two different point patterns
reach Interaction Distance of a Point Process
rmh.ppm Simulate from a Fitted Point Process Model
simulate.ppm Simulate a Fitted Gibbs Point Process Model
print.im Print Brief Details of an Image
plot.ppp plot a Spatial Point Pattern
rcell Simulate Baddeley-Silverman Cell Process
print.ppp Print Brief Details of a Point Pattern Dataset
scanpp Read Point Pattern From Data File
rmhstart Determine Initial State for Metropolis-Hastings Simulation.
summary.psp Summary of a Line Segment Pattern Dataset
print.ppm Print a Fitted Point Process Model
summary.im Summarizing a Pixel Image
fryplot Fry Plot of Point Pattern
rMosaicField Mosaic Random Field
disc Circular Window
intersect.tess Intersection of Two Tessellations
localKinhom Inhomogeneous Neighbourhood Density Function
rescale Convert dataset to another unit of length
ppp Create a Point Pattern
plot.ppm plot a Fitted Point Process Model
pool Pool Data
ripras Estimate window from points alone
simulate.kppm Simulate a Fitted Cluster Point Process Model
pixelquad Quadrature Scheme Based on Pixel Grid
crossdist Pairwise distances
rpoispp Generate Poisson Point Pattern
runifpointOnLines Generate N Uniform Random Points On Line Segments
trim.rectangle Cut margins from rectangle
psstG Pseudoscore Diagnostic For Fitted Model against Saturation Alternative
plot.quad plot a Spatial Quadrature Scheme
rDGS Perfect Simulation of the Diggle-Gates-Stibbard Process
rMaternI Simulate Matern Model I
rescale.owin Convert Window to Another Unit of Length
volume Volume of an Object
Softcore The Soft Core Point Process Model
methods.lpp Methods for Point Patterns on a Linear Network
with.hyperframe Evaluate an Expression in Each Row of a Hyperframe
print.owin Print Brief Details of a Spatial Window
nncorr Nearest-Neighbour Correlation Indices of Marked Point Pattern
split.ppp Divide Point Pattern into Sub-patterns
ppm.object Class of Fitted Point Process Models
is.multitype.ppm Test Whether A Point Process Model is Multitype
unique.ppp Extract Unique Points from a Spatial Point Pattern
valid.ppm Check Whether Point Process Model is Valid
rlinegrid Generate grid of parallel lines with random displacement
plot.bermantest Plot Result of Berman Test
profilepl Profile Maximum Pseudolikelihood
varblock Estimate Variance of Summary Statistic by Subdivision
scaletointerval Rescale Data to Lie Between Specified Limits
shift.im Apply Vector Translation To Pixel Image
lineardisc Compute Disc of Given Radius in Linear Network
ponderosa Ponderosa Pine Tree Point Pattern
print.quad Print a Quadrature Scheme
vargamma.estpcf Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
rshift.psp Randomly Shift a Line Segment Pattern
plot.msr Plot a Signed or Vector-Valued Measure
rpoislpp Poisson Point Process on a Linear Network
linearpcf Linear Pair Correlation Function
rmh.default Simulate Point Process Models using the Metropolis-Hastings Algorithm.
summary.ppp Summary of a Point Pattern Dataset
rNeymanScott Simulate Neyman-Scott Process
coef.ppm Coefficients of Fitted Point Process Model
vcov.ppm Variance-Covariance Matrix for a Fitted Point Process Model
slrm Spatial Logistic Regression
simulate.slrm Simulate a Fitted Spatial Logistic Regression Model
psstA Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative
Gfox Foxall's Distance Functions
rpoislinetess Poisson Line Tessellation
mean.im Maximum, Minimum, Mean, Median, Range or Sum of Pixel Values in an Image
nnwhich.ppx Nearest Neighbours in Any Dimensions
anova.slrm Analysis of Deviance for Spatial Logistic Regression Models
miplot Morishita Index Plot
markcorrint Mark Correlation Integral
incircle Find Largest Circle Inside Window
pcfcross.inhom Inhomogeneous Multitype Pair Correlation Function (Cross-Type)
spokes Spokes pattern of dummy points
plot.slrm Plot a Fitted Spatial Logistic Regression
rGaussPoisson Simulate Gauss-Poisson Process
distfun Distance Map as a Function
interp.im Interpolate a Pixel Image
quadrat.test.splitppp Chi-Squared Test of CSR for Split Point Pattern
Kscaled Locally Scaled K-function
linnet Create a Linear Network
nsegments Number of Line Segments in a Line Segment Pattern
rStrauss Perfect Simulation of the Strauss Process
summary.splitppp Summary of a Split Point Pattern
rotate Rotate
plot.splitppp Plot a List of Point Patterns
hist.im Histogram of Pixel Values in an Image
rpoisppOnLines Generate Poisson Point Pattern on Line Segments
triplet.family Triplet Interaction Family
shift Apply Vector Translation
marks.psp Marks of a Line Segment Pattern
matclust.estK Fit the Matern Cluster Point Process by Minimum Contrast
opening Morphological Opening
owin.object Class owin
simplenet Simple Example of Linear Network
rlabel Random Re-Labelling of Point Pattern
logLik.ppm Log Likelihood and AIC for Point Process Model
fitted.slrm Fitted Probabilities for Spatial Logistic Regression
pool.envelope Pool Data from Several Envelopes
rescale.ppp Convert Point Pattern to Another Unit of Length
ppx Multidimensional Space-Time Point Pattern
rmpoint Generate N Random Multitype Points
rpoisline Generate Poisson Random Line Process
raster.x Cartesian Coordinates for a Pixel Raster
spruces Spruces Point Pattern
quadratcount Quadrat counting for a point pattern
quadratresample Resample a Point Pattern by Resampling Quadrats
Hest Spherical Contact Distribution Function
Gmulti Marked Nearest Neighbour Distance Function
Ldot Multitype L-function (i-to-any)
bdist.points Distance to Boundary of Window
chicago Chicago Street Crime Data
as.data.frame.ppp Coerce Point Pattern to a Data Frame
Pairwise Generic Pairwise Interaction model
Kcross.inhom Inhomogeneous Cross K Function
bw.scott Scott's Rule for Bandwidth Selection for Kernel Density
crossdist.default Pairwise distances between two different sets of points
anova.ppm ANOVA for Fitted Point Process Models
MultiHard The Multitype Hard Core Point Process Model
gorillas Gorilla Nesting Sites
diameter.owin Diameter of a Window
Gres Residual G Function
eroded.areas Areas of Morphological Erosions
istat Point and Click Interface for Exploratory Analysis of Point Pattern
influence.ppm Influence Measure for Spatial Point Process Model
nndist.ppx Nearest Neighbour Distances in Any Dimensions
Fest Estimate the empty space function F
lansing Lansing Woods Point Pattern
markcorr Mark Correlation Function
plot.psp plot a Spatial Line Segment Pattern
formula.ppm Model Formulae for Gibbs Point Process Models
expand.owin Expand Window By Factor
plot.leverage.ppm Plot Leverage Function
methods.rhohat Methods for Intensity Functions of Spatial Covariate
plot.pp3 Plot a three-dimensional point pattern
msr Signed or Vector-Valued Measure
plot.linnet Plot a linear network
model.depends Identify Covariates Involved in each Model Term
plot.linim Plot Pixel Image on Linear Network
rDiggleGratton Perfect Simulation of the Diggle-Gratton Process
methods.slrm Methods for Spatial Logistic Regression Models
pcf3est Pair Correlation Function of a Three-Dimensional Point Pattern
pairdist.psp Pairwise distances between line segments
redwood California Redwoods Point Pattern (Ripley's Subset)
runifdisc Generate N Uniform Random Points in a Disc
print.psp Print Brief Details of a Line Segment Pattern Dataset
setcov Set Covariance of a Window
as.mask.psp Convert Line Segment Pattern to Binary Pixel Mask
nndist.psp Nearest neighbour distances between line segments
sharpen Data Sharpening of Point Pattern
stieltjes Compute Integral of Function Against Cumulative Distribution
rmhmodel.ppm Interpret Fitted Model for Metropolis-Hastings Simulation.
pool.rat Pool Data from Several Ratio Objects
rshift.ppp Randomly Shift a Point Pattern
im Create a Pixel Image Object
inforder.family Infinite Order Interaction Family
pairdist.lpp Pairwise shortest-path distances between points on a linear network
unitname Name for Unit of Length
tile.areas Compute Areas of Tiles in a Tessellation
unmark Remove Marks
rshift Random Shift
summary.owin Summary of a Spatial Window
pairsat.family Saturated Pairwise Interaction Point Process Family
Kdot Multitype K Function (i-to-any)
bounding.box.xy Convex Hull of Points
bronzefilter Bronze gradient filter data
Triplets The Triplet Point Process Model
cells Biological Cells Point Pattern
clickppp Interactively Add Points
duplicated.ppp Determine Duplicated Points in a Spatial Point Pattern
as.box3 Convert Data to Three-Dimensional Box
harmonic Basis for Harmonic Functions
crossdist.psp Pairwise distances between two different line segment patterns
envelope.pp3 Simulation Envelopes of Summary Function for 3D Point Pattern
methods.linnet Methods for Linear Networks
pool.fasp Pool Data from Several Function Arrays
owin Create a Window
plot.plotppm Plot a plotppm Object Created by plot.ppm
cauchy.estpcf Fit the Neyman-Scott cluster process with Cauchy kernel
methods.lppm Methods for Fitted Point Process Models on a Linear Network
plot.kppm Plot a fitted cluster point process
persp.im Perspective Plot of Pixel Image
rVarGamma Simulate Neyman-Scott Point Process with Variance Gamma cluster kernel
psst Pseudoscore Diagnostic For Fitted Model against General Alternative
rotate.owin Rotate a Window
residuals.ppm Residuals for Fitted Point Process Model
urkiola Urkiola Woods Point Pattern
idw Inverse-distance weighted smoothing of observations at irregular points
suffstat Sufficient Statistic of Point Process Model
tess Create a Tessellation
Kmulti Marked K-Function
as.rectangle Window Frame
centroid.owin Centroid of a window
dirichlet Dirichlet Tessellation of Point Pattern
affine Apply Affine Transformation
fv.object Function Value Table
is.marked Test Whether Marks Are Present
distmap.owin Distance Map of Window
is.multitype Test whether Object is Multitype
is.empty Test Whether An Object Is Empty
linearKinhom Inhomogeneous Linear K Function
leverage.ppm Leverage Measure for Spatial Point Process Model
markconnect Mark Connection Function
plot.fv Plot Function Values
relrisk Nonparametric Estimate of Spatially-Varying Relative Risk
predict.lppm Predict Point Process Model on Linear Network
predict.kppm Prediction from a Fitted Cluster Point Process Model
selfcrossing.psp Crossing Points in a Line Segment Pattern
runifpoint3 Generate N Uniform Random Points in Three Dimensions
redwoodfull California Redwoods Point Pattern (Entire Dataset)
summary.quad Summarizing a Quadrature Scheme
project.ppm Force Point Process Model to be Valid
spatstat-package The Spatstat Package
zapsmall.im Rounding of Pixel Values
rescue.rectangle Convert Window Back To Rectangle
Gcom Model Compensator of Nearest Neighbour Function
crossdist.ppx Pairwise Distances Between Two Different Multi-Dimensional Point Patterns
blur Apply Gaussian Blur to a Pixel Image
ants Harkness-Isham ants' nests data
Lest L-function
clickjoin Interactively join vertices on a plot
Saturated Saturated Pairwise Interaction model
discpartarea Area of Part of Disc
default.expand Compute Expansion Window for Simulation
methods.ppx Methods for Multidimensional Space-Time Point Patterns
osteo Osteocyte Lacunae Data: Replicated Three-Dimensional Point Patterns
kaplan.meier Kaplan-Meier Estimator using Histogram Data
midpoints.psp Midpoints of Line Segment Pattern
is.multitype.ppp Test Whether A Point Pattern is Multitype
perimeter Perimeter Length of Window
plot.owin Plot a Spatial Window
pairdist.ppp Pairwise distances
ppm Fit Point Process Model to Data
rotate.ppp Rotate a Point Pattern
quad.ppm Extract Quadrature Scheme Used to Fit a Point Process Model
psp Create a Line Segment Pattern
shift.psp Apply Vector Translation To Line Segment Pattern
swedishpines Swedish Pines Point Pattern
is.ppp Test Whether An Object Is A Point Pattern
rmh Simulate point patterns using the Metropolis-Hastings algorithm.
rgbim Create Colour-Valued Pixel Image
linearpcfinhom Inhomogeneous Linear Pair Correlation Function
update.ppm Update a Fitted Point Process Model
rmpoispp Generate Multitype Poisson Point Pattern
SatPiece Piecewise Constant Saturated Pairwise Interaction Point Process Model
as.hyperframe.ppx Extract coordinates and marks of multidimensional point pattern
as.interact Extract Interaction Structure
marktable Tabulate Marks in Neighbourhood of Every Point in a Point Pattern
convexhull Convex Hull
bw.stoyan Stoyan's Rule of Thumb for Bandwidth Selection
methods.box3 Methods for Three-Dimensional Box
identify.ppp Identify Points in a Point Pattern
lgcp.estpcf Fit a Log-Gaussian Cox Point Process by Minimum Contrast
betacells Beta Ganglion Cells in Cat Retina
rCauchy Simulate Neyman-Scott Point Process with Cauchy cluster kernel
sumouter Compute Quadratic Forms
marks Marks of a Point Pattern
npfun Dummy Function Returns Number of Points
rThomas Simulate Thomas Process
smooth.msr Smooth a Signed or Vector-Valued Measure
cut.ppp Classify Points in a Point Pattern
square Square Window
vargamma.estK Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel
distmap.psp Distance Map of Line Segment Pattern
quad.object Class of Quadrature Schemes
residualspaper Data and Code From JRSS Discussion Paper on Residuals
contour.listof Plot a List of Things
eval.im Evaluate Expression Involving Pixel Images
is.marked.ppm Test Whether A Point Process Model is Marked
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Details

Date 2012-02-05
License GPL (>= 2)
URL http://www.spatstat.org
LazyData true
LazyLoad true
ByteCompile true
Packaged 2012-02-05 05:28:44 UTC; adrian
Repository CRAN
Date/Publication 2012-02-05 07:53:32
depends base (>= 2.14.0) , deldir (>= 0.0-10) , graphics , mgcv , R (>= 2.14.0) , stats , utils
suggests gpclib , maptools , RandomFields (>= 2.0) , rpanel , scatterplot3d , sm , spatial , tkrplot
Contributors Rolf Turner, Adrian Baddeley

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